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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3HY2
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SULFIREDOXIN IN COMPLEX WITH PEROXIREDOXIN I AND ATP:MG2+
Authors
:
T. J. Jonsson, L. C. Johnson, W. T. Lowther
Date
:
22 Jun 09 (Deposition) - 06 Oct 09 (Release) - 18 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,X,Y
Biol. Unit 1: A,B,X,Y (1x)
Keywords
:
Protein-Protein Complex, Redox Biology, Protein Repair, Sulfur Chemistry, Antioxidant, Disulfide Bond, Oxidoreductase, Peroxidase, Phosphoprotein, Redox-Active Center, Atp-Binding, Magnesium, Nucleotide-Binding
(Keyword Search:
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Reference
:
T. J. Jonsson, L. C. Johnson, W. T. Lowther
Protein Engineering Of The Quaternary Sulfiredoxin-Peroxiredoxin Enzyme-Substrate Complex Reveals The Molecular Basis For Cysteine Sulfinic Acid Phosphorylation
J. Biol. Chem. V. 284 33305 2009
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:52 , LYS A:93 , MG A:207 , HOH A:245 , HOH A:248 , HOH A:275 , LYS X:61 , SER X:64 , LEU X:65 , THR X:68 , SER X:75 , PRO X:77 , GLY X:98 , ALA X:99 , HIS X:100 , ARG X:101 , HOH X:140 , HOH X:176 , HOH X:217 , HOH X:318
BINDING SITE FOR RESIDUE ATP X 1
2
AC2
SOFTWARE
ASP B:52 , LYS B:93 , MG B:207 , HOH B:275 , HOH B:282 , HOH B:315 , LYS Y:61 , SER Y:64 , LEU Y:65 , THR Y:68 , SER Y:75 , PRO Y:77 , GLY Y:98 , ALA Y:99 , HIS Y:100 , ARG Y:101 , HOH Y:138 , HOH Y:207 , HOH Y:242 , HOH Y:254 , HOH Y:293
BINDING SITE FOR RESIDUE ATP Y 2
3
AC3
SOFTWARE
ASP A:52 , HOH A:245 , HOH A:248 , ATP X:1 , HOH X:140
BINDING SITE FOR RESIDUE MG A 207
4
AC4
SOFTWARE
ASP B:52 , HOH B:275 , HOH B:282 , ATP Y:2 , HOH Y:138
BINDING SITE FOR RESIDUE MG B 207
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_025050 (R62G, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_025050
R
62
G
PRDX1_HUMAN
Polymorphism
34034070
A/B
R
62
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:6-165,B:6-165)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
PRDX1_HUMAN
6-165
2
A:6-165
B:6-165
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Exons
(5, 10)
Info
All Exons
Exon 1.3b (A:3-36 | B:3-36)
Exon 1.4 (A:36-87 | B:36-87)
Exon 1.5a (A:87-128 | B:87-128)
Exon 1.6 (A:128-172 | B:128-172)
Exon 1.7b (A:172-187 | B:172-186)
View:
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All Exon Boundaries
1: Boundary 1.2a/1.3b
2: Boundary 1.3b/1.4
3: Boundary 1.4/1.5a
4: Boundary 1.5a/1.6
5: Boundary 1.6/1.7b
6: Boundary 1.7b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000319248
2a
ENSE00001456866
chr1:
45987628-45987501
128
PRDX1_HUMAN
-
0
0
-
-
1.3b
ENST00000319248
3b
ENSE00002170473
chr1:
45984726-45984610
117
PRDX1_HUMAN
1-36
36
2
A:3-36
B:3-36
34
34
1.4
ENST00000319248
4
ENSE00000771100
chr1:
45981479-45981326
154
PRDX1_HUMAN
36-87
52
2
A:36-87
B:36-87
52
52
1.5a
ENST00000319248
5a
ENSE00000771101
chr1:
45980667-45980545
123
PRDX1_HUMAN
87-128
42
2
A:87-128
B:87-128
42
42
1.6
ENST00000319248
6
ENSE00002185232
chr1:
45980309-45980179
131
PRDX1_HUMAN
128-172
45
2
A:128-172
B:128-172
45
45
1.7b
ENST00000319248
7b
ENSE00001845867
chr1:
45977086-45976719
368
PRDX1_HUMAN
172-199
28
2
A:172-187
B:172-186
16
15
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3hy2x_ (X:)
1b: SCOP_d3hy2y_ (Y:)
2a: SCOP_d3hy2a_ (A:)
2b: SCOP_d3hy2b_ (B:)
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Protein Domains
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Organisms
(
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ParB/Sulfiredoxin
(11)
Superfamily
:
ParB/Sulfiredoxin
(11)
Family
:
Sulfiredoxin-like
(7)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3hy2x_
X:
1b
d3hy2y_
Y:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
automated matches
(46)
Human (Homo sapiens) [TaxId: 9606]
(16)
2a
d3hy2a_
A:
2b
d3hy2b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3hy2B00 (B:3-186)
1b: CATH_3hy2A00 (A:3-187)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
3hy2B00
B:3-186
1b
3hy2A00
A:3-187
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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