PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3HWK
Asym. Unit
Info
Asym.Unit (474 KB)
Biol.Unit 1 (124 KB)
Biol.Unit 2 (121 KB)
Biol.Unit 3 (121 KB)
Biol.Unit 4 (119 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF METHYLCITRATE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
17 Jun 09 (Deposition) - 30 Jun 09 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Niaid, Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Tubercluosis, Uw, Sbri, Decode, Acyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
[
close entry info
]
Hetero Components
(1, 16)
Info
All Hetero Components
1a: SUCCINIC ACID (SINa)
1b: SUCCINIC ACID (SINb)
1c: SUCCINIC ACID (SINc)
1d: SUCCINIC ACID (SINd)
1e: SUCCINIC ACID (SINe)
1f: SUCCINIC ACID (SINf)
1g: SUCCINIC ACID (SINg)
1h: SUCCINIC ACID (SINh)
1i: SUCCINIC ACID (SINi)
1j: SUCCINIC ACID (SINj)
1k: SUCCINIC ACID (SINk)
1l: SUCCINIC ACID (SINl)
1m: SUCCINIC ACID (SINm)
1n: SUCCINIC ACID (SINn)
1o: SUCCINIC ACID (SINo)
1p: SUCCINIC ACID (SINp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SIN
16
Ligand/Ion
SUCCINIC ACID
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:207 , ASN A:210 , HIS A:242 , HIS A:281 , ARG A:290 , ARG A:357 , HOH A:444 , HOH A:484 , ARG B:376
BINDING SITE FOR RESIDUE SIN A 401
02
AC2
SOFTWARE
SER A:43 , LYS A:44 , LEU A:52 , HIS A:207 , GLY A:208 , HOH A:417 , HOH A:428 , ARG B:376
BINDING SITE FOR RESIDUE SIN A 402
03
AC3
SOFTWARE
GLY A:280 , HIS A:281 , ARG A:282
BINDING SITE FOR RESIDUE SIN A 403
04
AC4
SOFTWARE
ARG A:77 , ARG A:92 , ARG A:141 , MET A:145
BINDING SITE FOR RESIDUE SIN A 404
05
AC5
SOFTWARE
ARG A:376 , HIS B:207 , ASN B:210 , HIS B:242 , HIS B:281 , ARG B:290 , ARG B:357 , HOH B:404 , HOH B:536 , HOH B:597
BINDING SITE FOR RESIDUE SIN B 405
06
AC6
SOFTWARE
ARG A:376 , SER B:43 , LYS B:44 , VAL B:45 , LEU B:52 , HIS B:207 , GLY B:208 , VAL B:283 , HOH B:484 , HOH B:952 , HOH B:953
BINDING SITE FOR RESIDUE SIN B 406
07
AC7
SOFTWARE
HIS C:207 , ASN C:210 , HIS C:242 , HIS C:281 , ARG C:290 , ARG C:357 , HOH C:431 , HOH C:936 , ARG D:376
BINDING SITE FOR RESIDUE SIN C 407
08
AC8
SOFTWARE
ARG C:77 , ARG C:92 , ARG C:141 , MET C:145 , HOH C:959
BINDING SITE FOR RESIDUE SIN C 408
09
AC9
SOFTWARE
ARG C:376 , HIS D:207 , ASN D:210 , HIS D:242 , HIS D:281 , ARG D:290 , PHE D:353 , ARG D:357 , HOH D:417 , HOH D:444 , HOH D:466
BINDING SITE FOR RESIDUE SIN D 409
10
BC1
SOFTWARE
ARG C:376 , SER D:43 , LYS D:44 , VAL D:45 , LEU D:52 , HIS D:207 , GLY D:208 , HOH D:474
BINDING SITE FOR RESIDUE SIN D 410
11
BC2
SOFTWARE
HIS E:207 , ASN E:210 , HIS E:242 , HIS E:281 , ARG E:290 , ARG E:357 , HOH E:402 , HOH E:415 , ARG F:376
BINDING SITE FOR RESIDUE SIN E 416
12
BC3
SOFTWARE
ARG E:376 , HIS F:207 , ASN F:210 , HIS F:242 , HIS F:281 , ARG F:290 , PHE F:353 , ARG F:357 , HOH F:452 , HOH F:534 , HOH F:938
BINDING SITE FOR RESIDUE SIN F 411
13
BC4
SOFTWARE
ARG E:376 , SER F:43 , LYS F:44 , VAL F:45 , LEU F:52 , HIS F:207 , GLY F:208 , HOH F:424 , HOH F:449 , HOH F:939
BINDING SITE FOR RESIDUE SIN F 412
14
BC5
SOFTWARE
HIS G:207 , ASN G:210 , HIS G:242 , HIS G:281 , ARG G:290 , ARG G:357 , HOH G:429 , ARG H:376
BINDING SITE FOR RESIDUE SIN G 413
15
BC6
SOFTWARE
SER G:43 , LYS G:44 , VAL G:45 , LEU G:52 , HIS G:207 , GLY G:208 , HOH G:921 , HOH G:940 , ARG H:376
BINDING SITE FOR RESIDUE SIN G 414
16
BC7
SOFTWARE
ARG G:376 , HIS H:207 , ASN H:210 , HIS H:242 , HIS H:281 , ARG H:290 , PHE H:353 , ARG H:357 , HOH H:934
BINDING SITE FOR RESIDUE SIN H 415
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: CITRATE_SYNTHASE (A:278-290,B:278-290,C:278-290,D:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CITRATE_SYNTHASE
PS00480
Citrate synthase signature.
PRPC_MYCTU
278-290
8
A:278-290
B:278-290
C:278-290
D:278-290
E:278-290
F:278-290
G:278-290
H:278-290
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (474 KB)
Header - Asym.Unit
Biol.Unit 1 (124 KB)
Header - Biol.Unit 1
Biol.Unit 2 (121 KB)
Header - Biol.Unit 2
Biol.Unit 3 (121 KB)
Header - Biol.Unit 3
Biol.Unit 4 (119 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3HWK
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help