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3HW7
Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
HIGH PRESSURE (0.57 GPA) CRYSTAL STRUCTURE OF BOVINE COPPER, ZINC SUPEROXIDE DISMUTASE AT 2.0 ANGSTROMS
Authors
:
I. Ascone, C. Savino
Date
:
17 Jun 09 (Deposition) - 23 Jun 10 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Bovine, Superoxide Dismutase, High Pressure, Flexible Electrostatic Loop, Antioxidant, Disulfide Bond, Metal-Binding, Oxidoreductase, Metal Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
I. Ascone, C. Savino, R. Kahn, R. Fourme
Flexibility Of The Cu, Zn Superoxide Dismutase Structure Investigated At 0. 57 Gpa
Acta Crystallogr. , Sect. D V. 66 654 2010
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: COPPER (I) ION (CU1a)
1b: COPPER (I) ION (CU1b)
2a: COPPER (II) ION (CUa)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
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No.
Name
Count
Type
Full Name
2
CU
1
Ligand/Ion
COPPER (II) ION
1
CU1
2
Ligand/Ion
COPPER (I) ION
3
ZN
2
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:44 , HIS A:46 , HIS A:61 , HIS A:118
BINDING SITE FOR RESIDUE CU1 A 152
2
AC2
SOFTWARE
HIS A:61 , HIS A:69 , HIS A:78 , ASP A:81
BINDING SITE FOR RESIDUE ZN A 153
3
AC3
SOFTWARE
HIS B:44 , HIS B:46 , HIS B:61 , HIS B:118
BINDING SITE FOR RESIDUE CU1 B 152
4
AC4
SOFTWARE
HIS B:44 , HIS B:46 , HIS B:61 , HIS B:118 , HOH B:398
BINDING SITE FOR RESIDUE CU B 153
5
AC5
SOFTWARE
HIS B:61 , HIS B:69 , HIS B:78 , ASP B:81 , LYS B:134
BINDING SITE FOR RESIDUE ZN B 154
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: SOD_CU_ZN_1 (A:42-52,B:42-52)
2: SOD_CU_ZN_2 (A:136-147,B:136-147)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOD_CU_ZN_1
PS00087
Copper/Zinc superoxide dismutase signature 1.
SODC_BOVIN
43-53
2
A:42-52
B:42-52
2
SOD_CU_ZN_2
PS00332
Copper/Zinc superoxide dismutase signature 2.
SODC_BOVIN
137-148
2
A:136-147
B:136-147
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Exons
(5, 10)
Info
All Exons
Exon 1.1 (A:1-23 | B:1-23)
Exon 1.2 (A:24-54 | B:24-54)
Exon 1.3 (A:54-77 | B:54-77)
Exon 1.4 (A:77-116 | B:77-116)
Exon 1.5 (A:117-151 | B:117-151)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000032452
1
ENSBTAE00000259570
chr1:
2920927-2920763
165
SODC_BOVIN
1-24
24
2
A:1-23
B:1-23
23
23
1.2
ENSBTAT00000032452
2
ENSBTAE00000204052
chr1:
2917164-2917074
91
SODC_BOVIN
25-55
31
2
A:24-54
B:24-54
31
31
1.3
ENSBTAT00000032452
3
ENSBTAE00000204053
chr1:
2915376-2915307
70
SODC_BOVIN
55-78
24
2
A:54-77
B:54-77
24
24
1.4
ENSBTAT00000032452
4
ENSBTAE00000204054
chr1:
2914479-2914362
118
SODC_BOVIN
78-117
40
2
A:77-116
B:77-116
40
40
1.5
ENSBTAT00000032452
5
ENSBTAE00000204055
chr1:
2912760-2912336
425
SODC_BOVIN
118-152
35
2
A:117-151
B:117-151
35
35
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3hw7a_ (A:)
1b: SCOP_d3hw7b_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cu,Zn superoxide dismutase-like
(165)
Family
:
Cu,Zn superoxide dismutase-like
(158)
Protein domain
:
Cu,Zn superoxide dismutase, SOD
(134)
Cow (Bos taurus) [TaxId: 9913]
(23)
1a
d3hw7a_
A:
1b
d3hw7b_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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