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3HUP
Asym. Unit
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Asym.Unit (104 KB)
Biol.Unit 1 (100 KB)
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(1)
Title
:
HIGH-RESOLUTION STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN CD69
Authors
:
P. Kolenko, J. Dohnalek, T. Skalova, J. Hasek, J. Duskova, O. Vanek, K. B
Date
:
15 Jun 09 (Deposition) - 15 Dec 09 (Release) - 17 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.37
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
C-Type Lectin-Like Domain, Disulfide Bond, Glycoprotein, Lectin, Membrane, Phosphoprotein, Signal-Anchor, Transmembrane, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kolenko, T. Skalova, O. Vanek, A. Stepankova, J. Duskova, J. Hasek, K. Bezouska, J. Dohnalek
The High-Resolution Structure Of The Extracellular Domain O Human Cd69 Using A Novel Polymer
Acta Crystallogr. , Sect. F V. 65 1258 2009
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
5
Ligand/Ion
CHLORIDE ION
2
NA
1
Ligand/Ion
SODIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:103 , HOH A:300 , LYS B:103
BINDING SITE FOR RESIDUE CL A 201
2
AC2
SOFTWARE
TRP A:155 , LYS A:159 , PHE A:161 , ASN A:162 , TRP A:164 , HOH A:269
BINDING SITE FOR RESIDUE CL A 202
3
AC3
SOFTWARE
SER A:100 , THR A:101 , HOH A:280 , HOH A:284
BINDING SITE FOR RESIDUE CL A 203
4
AC4
SOFTWARE
TRP B:155 , PHE B:161 , ASN B:162 , TRP B:164 , HOH B:283 , HOH B:316
BINDING SITE FOR RESIDUE CL B 201
5
AC5
SOFTWARE
THR B:101
BINDING SITE FOR RESIDUE CL B 202
6
AC6
SOFTWARE
GLY A:91 , HOH A:213 , HOH A:214 , SER B:86 , TRP B:89
BINDING SITE FOR RESIDUE NA B 203
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:92-195,B:92-195)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
CD69_HUMAN
92-195
2
A:92-195
B:92-195
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Exons
(3, 6)
Info
All Exons
Exon 1.3a (A:79-129 | B:82-129)
Exon 1.4 (A:130-164 | B:130-164)
Exon 1.5 (A:164-199 | B:164-199)
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All Exon Boundaries
1: Boundary 1.2/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000228434
1
ENSE00000821823
chr12:
9913497-9913353
145
CD69_HUMAN
1-22
22
0
-
-
1.2
ENST00000228434
2
ENSE00000718673
chr12:
9909015-9908893
123
CD69_HUMAN
22-63
42
0
-
-
1.3a
ENST00000228434
3a
ENSE00000718665
chr12:
9907857-9907658
200
CD69_HUMAN
63-129
67
2
A:79-129
B:82-129
51
48
1.4
ENST00000228434
4
ENSE00000718659
chr12:
9907286-9907183
104
CD69_HUMAN
130-164
35
2
A:130-164
B:130-164
35
35
1.5
ENST00000228434
5
ENSE00000821822
chr12:
9906185-9905082
1104
CD69_HUMAN
164-199
36
2
A:164-199
B:164-199
36
36
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3hupa_ (A:)
1b: SCOP_d3hupb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d3hupa_
A:
1b
d3hupb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3hupA00 (A:79-199)
1b: CATH_3hupB00 (B:82-199)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
1a
3hupA00
A:79-199
1b
3hupB00
B:82-199
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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