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Getting 'Biological Unit' information from database.
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3HU3
Biol. Unit 1
Info
Asym.Unit (155 KB)
Biol.Unit 1 (441 KB)
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(1)
Title
:
STRUCTURE OF P97 N-D1 R155H MUTANT IN COMPLEX WITH ATPGS
Authors
:
W. -K. Tang
Date
:
12 Jun 09 (Deposition) - 16 Jun 10 (Release) - 15 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
P97, Vcp, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. K. Tang, D. Li, C. C. Li, L. Esser, R. Dai, L. Guo, D. Xia
A Novel Atp-Dependent Conformation In P97 N-D1 Fragment Revealed By Crystal Structures Of Disease-Related Mutants.
Embo J. V. 29 2217 2010
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSa)
1b: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AGS
6
Ligand/Ion
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:205 , GLY A:207 , GLY A:248 , THR A:249 , GLY A:250 , LYS A:251 , THR A:252 , LEU A:253 , ASN A:348 , ILE A:380 , HIS A:384 , GLY A:408 , ALA A:409 , MG A:801 , HOH A:802 , HOH A:803 , HOH A:804 , HOH A:894 , HOH A:953 , HOH A:955
BINDING SITE FOR RESIDUE AGS A 800
2
AC2
SOFTWARE
THR A:252 , AGS A:800 , HOH A:802 , HOH A:803 , HOH A:804
BINDING SITE FOR RESIDUE MG A 801
3
AC3
SOFTWARE
ARG A:359 , PHE A:360 , ASP B:205 , GLY B:207 , PRO B:247 , GLY B:248 , THR B:249 , GLY B:250 , LYS B:251 , THR B:252 , LEU B:253 , ASN B:348 , ILE B:380 , HIS B:384 , GLY B:408 , ALA B:409 , MG B:801 , HOH B:802 , HOH B:803 , HOH B:804 , HOH B:872 , HOH B:909 , HOH B:910
BINDING SITE FOR RESIDUE AGS B 800
4
AC4
SOFTWARE
THR B:252 , AGS B:800 , HOH B:802 , HOH B:803 , HOH B:804
BINDING SITE FOR RESIDUE MG B 801
[
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SAPs(SNPs)/Variants
(8, 48)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_033016 (R95G, chain A/B, )
2: VAR_033017 (H155C, chain A/B, )
3: VAR_033018 (H155H, chain A/B, )
4: VAR_033019 (H155P, chain A/B, )
5: VAR_065910 (R159G, chain A/B, )
6: VAR_033020 (R159H, chain A/B, )
7: VAR_033021 (R191Q, chain A/B, )
8: VAR_033022 (A232E, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033016
R
95
G
TERA_HUMAN
Disease (IBMPFD1)
---
A/B
R
95
G
2
UniProt
VAR_033017
R
155
C
TERA_HUMAN
Disease (IBMPFD1)
---
A/B
H
155
C
3
UniProt
VAR_033018
R
155
H
TERA_HUMAN
Disease (IBMPFD1)
---
A/B
H
155
H
4
UniProt
VAR_033019
R
155
P
TERA_HUMAN
Disease (IBMPFD1)
---
A/B
H
155
P
5
UniProt
VAR_065910
R
159
G
TERA_HUMAN
Disease (ALS14)
---
A/B
R
159
G
6
UniProt
VAR_033020
R
159
H
TERA_HUMAN
Disease (IBMPFD1)
---
A/B
R
159
H
7
UniProt
VAR_033021
R
191
Q
TERA_HUMAN
Disease (IBMPFD1)
---
A/B
R
191
Q
8
UniProt
VAR_033022
A
232
E
TERA_HUMAN
Disease (IBMPFD1)
---
A/B
A
232
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: AAA (A:341-359,B:341-359|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AAA
PS00674
AAA-protein family signature.
TERA_HUMAN
341-359
617-635
6
A:341-359
B:341-359
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3hu3a1 (A:17-106)
1b: SCOP_d3hu3b1 (B:17-106)
2a: SCOP_d3hu3a2 (A:107-200)
2b: SCOP_d3hu3b2 (B:107-200)
3a: SCOP_d3hu3a3 (A:201-469)
3b: SCOP_d3hu3b3 (B:201-462)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double psi beta-barrel
(111)
Superfamily
:
ADC-like
(88)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3hu3a1
A:17-106
1b
d3hu3b1
B:17-106
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cdc48 domain 2-like
(22)
Superfamily
:
Cdc48 domain 2-like
(22)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d3hu3a2
A:107-200
2b
d3hu3b2
B:107-200
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Extended AAA-ATPase domain
(92)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(6)
3a
d3hu3a3
A:201-469
3b
d3hu3b3
B:201-462
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
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Asym.Unit (155 KB)
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Header - Biol.Unit 1
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