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3HTN
Asym. Unit
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Asym.Unit (95 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE DNA BINDING PROTEIN (BT_1116) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.50 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
12 Jun 09 (Deposition) - 30 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Duf269 Family Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Dna Binding Protein (Np_810029. 1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1. 50 A Resolution
To Be Published
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Hetero Components
(5, 25)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
2a: FE (III) ION (FEa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
4a: NICKEL (II) ION (NIa)
4b: NICKEL (II) ION (NIb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
5
Ligand/Ion
PENTAETHYLENE GLYCOL
2
FE
1
Ligand/Ion
FE (III) ION
3
MSE
9
Mod. Amino Acid
SELENOMETHIONINE
4
NI
2
Ligand/Ion
NICKEL (II) ION
5
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:131 , HIS A:133 , HIS A:147 , HOH A:410 , HOH C:619
BINDING SITE FOR RESIDUE NI A 201
02
AC2
SOFTWARE
LYS A:106 , PHE A:108 , ARG A:138 , HOH A:294 , HOH A:304 , HOH A:398 , HOH B:524 , ASN C:97 , THR C:100 , ALA C:102 , HOH C:737
BINDING SITE FOR RESIDUE SO4 A 202
03
AC3
SOFTWARE
ASN A:52 , LYS A:53 , GLU A:162 , ASN B:52 , LYS B:53 , ASN C:52 , LYS C:53
BINDING SITE FOR RESIDUE SO4 A 203
04
AC4
SOFTWARE
SER A:123 , MSE A:124 , ASN A:125 , GLU A:126 , ARG A:167 , SER A:169 , HOH A:271 , HOH A:335
BINDING SITE FOR RESIDUE SO4 A 204
05
AC5
SOFTWARE
ARG A:94 , TYR A:103 , TYR A:129 , HIS A:147 , HOH A:287
BINDING SITE FOR RESIDUE 1PE A 205
06
AC6
SOFTWARE
ASN A:60 , HIS A:61 , HOH A:352 , LEU B:176
BINDING SITE FOR RESIDUE 1PE A 206
07
AC7
SOFTWARE
HOH A:269 , HIS B:131 , HIS B:133 , HIS B:147 , HOH B:519 , HOH B:528
BINDING SITE FOR RESIDUE FE B 207
08
AC8
SOFTWARE
HIS B:61 , HOH B:500
BINDING SITE FOR RESIDUE NI B 208
09
AC9
SOFTWARE
LYS B:106 , PHE B:108 , ARG B:138 , 1PE B:212 , HOH B:531 , HOH B:567
BINDING SITE FOR RESIDUE SO4 B 209
10
BC1
SOFTWARE
ASN B:125 , ARG B:167 , SER B:169 , ARG B:185 , HOH B:473 , HOH B:494 , HOH B:571
BINDING SITE FOR RESIDUE SO4 B 210
11
BC2
SOFTWARE
LYS B:49 , TYR B:54 , LYS B:75 , HOH B:573
BINDING SITE FOR RESIDUE SO4 B 211
12
BC3
SOFTWARE
GLU B:110 , ARG B:138 , SER B:139 , ASP B:140 , SO4 B:209 , HOH B:584
BINDING SITE FOR RESIDUE 1PE B 212
13
BC4
SOFTWARE
MSE C:124 , ASN C:125 , ARG C:167 , SER C:169 , ARG C:185 , HOH C:622 , HOH C:673
BINDING SITE FOR RESIDUE SO4 C 213
14
BC5
SOFTWARE
ASN A:97 , THR A:100 , ALA A:102 , HOH A:353 , LYS C:106 , ARG C:138 , HOH C:655 , HOH C:671 , HOH C:697 , HOH C:743 , HOH C:758
BINDING SITE FOR RESIDUE SO4 C 214
15
BC6
SOFTWARE
ARG A:109 , ARG C:94 , PHE C:96 , TYR C:103 , TYR C:129 , HIS C:147
BINDING SITE FOR RESIDUE 1PE C 215
16
BC7
SOFTWARE
TYR C:47 , LYS C:49 , TYR C:54 , LYS C:75 , HOH C:677
BINDING SITE FOR RESIDUE 1PE C 216
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3htna_ (A:)
1b: SCOP_d3htnb_ (B:)
1c: SCOP_d3htnc_ (C:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
AF0104/ALDC/Ptd012-like
(10)
Superfamily
:
AF0104/ALDC/Ptd012-like
(10)
Family
:
automated matches
(4)
Protein domain
:
automated matches
(4)
Bacteroides thetaiotaomicron [TaxId: 226186]
(1)
1a
d3htna_
A:
1b
d3htnb_
B:
1c
d3htnc_
C:
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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