PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3HTM
Asym. Unit
Info
Asym.Unit (110 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (53 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURES OF SPOP-SUBSTRATE COMPLEXES: INSIGHTS INTO MOLECULAR ARCHITECTURES OF BTB-CUL3 UBIQUITIN LIGASES: SPOPBTB/3-BOX
Authors
:
M. Zhuang, H. Walden, B. A. Schulman
Date
:
11 Jun 09 (Deposition) - 20 Oct 09 (Release) - 27 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Btb, Spop, Ubiquitin, Ligase, Nucleus, Ubl Conjugation Pathway, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Zhuang, M. F. Calabrese, J. Liu, M. B. Waddell, A. Nourse, M. Hammel, D. J. Miller, H. Walden, D. M. Duda, S. N. Seyedin, T. Hoggard, J. W. Harper, K. P. White, B. A. Schulman
Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases.
Mol. Cell V. 36 39 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 26)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
26
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: BTB (A:200-262,B:200-262,C:200-262,D:20...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BTB
PS50097
BTB domain profile.
SPOP_HUMAN
200-262
4
A:200-262
B:200-262
C:200-262
D:200-262
[
close PROSITE info
]
Exons
(5, 20)
Info
All Exons
Exon 1.16c (A:177-220 | B:177-220 | C:177-220 ...)
Exon 1.17 (A:220-238 | B:220-238 | C:220-238 ...)
Exon 1.18b (A:239-279 | B:239-279 | C:239-279 ...)
Exon 1.19b (A:280-327 | B:280-327 | C:280-327 ...)
Exon 1.20g (A:327-329 | B:327-329 | C:327-329 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.13b/1.16c
2: Boundary 1.16c/1.17
3: Boundary 1.17/1.18b
4: Boundary 1.18b/1.19b
5: Boundary 1.19b/1.20g
6: Boundary 1.20g/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000393328
1d
ENSE00002053260
chr17:
47755472-47755295
178
SPOP_HUMAN
-
0
0
-
-
1.2
ENST00000393328
2
ENSE00002056951
chr17:
47753378-47753257
122
SPOP_HUMAN
-
0
0
-
-
1.8d
ENST00000393328
8d
ENSE00002153086
chr17:
47700238-47700095
144
SPOP_HUMAN
1-26
26
0
-
-
1.10d
ENST00000393328
10d
ENSE00002189108
chr17:
47699429-47699308
122
SPOP_HUMAN
27-67
41
0
-
-
1.12c
ENST00000393328
12c
ENSE00002169279
chr17:
47696747-47696596
152
SPOP_HUMAN
67-118
52
0
-
-
1.13b
ENST00000393328
13b
ENSE00001746781
chr17:
47696470-47696343
128
SPOP_HUMAN
118-160
43
0
-
-
1.16c
ENST00000393328
16c
ENSE00000819785
chr17:
47688819-47688642
178
SPOP_HUMAN
161-220
60
4
A:177-220
B:177-220
C:177-220
D:177-220
44
44
44
44
1.17
ENST00000393328
17
ENSE00002159579
chr17:
47685291-47685236
56
SPOP_HUMAN
220-238
19
4
A:220-238
B:220-238
C:220-238 (gaps)
D:220-238 (gaps)
19
19
19
19
1.18b
ENST00000393328
18b
ENSE00000819783
chr17:
47684734-47684612
123
SPOP_HUMAN
239-279
41
4
A:239-279
B:239-279
C:239-279
D:239-279
41
41
41
41
1.19b
ENST00000393328
19b
ENSE00000736281
chr17:
47679369-47679227
143
SPOP_HUMAN
280-327
48
4
A:280-327
B:280-327
C:280-327
D:280-327
48
48
48
48
1.20g
ENST00000393328
20g
ENSE00002070429
chr17:
47677884-47676246
1639
SPOP_HUMAN
327-374
48
4
A:327-329
B:327-329
C:327-329
D:327-329
3
3
3
3
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (110 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
Biol.Unit 2 (53 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3HTM
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help