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3HT3
Asym. Unit
Info
Asym.Unit (236 KB)
Biol.Unit 1 (116 KB)
Biol.Unit 2 (118 KB)
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Title
:
CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS V713P MUTANT BOUND TO G:DCTP
Authors
:
E. Y. Wu, L. S. Beese
Date
:
11 Jun 09 (Deposition) - 14 Jul 10 (Release) - 29 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Protein-Dna Complex, Dna Polymerase I, Dna Replication, Dna-Binding, Dna-Directed Dna Polymerase, Hydrolase, Nuclease, Nucleotidyltransferase, Transferase, Transferase-Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
E. Y. Wu, L. S. Beese
The Structure Of A High Fidelity Dna Polymerase Bound To A Mismatched Nucleotide Reveals An "Ajar" Intermediate Conformation In The Nucleotide Selection Mechanism.
J. Biol. Chem. V. 286 19758 2011
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE (DCPa)
1b: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE (DCPb)
1c: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE (DCPc)
2a: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSP... (DOCa)
2b: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSP... (DOCb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
5a: SUCROSE (SUCa)
5b: SUCROSE (SUCb)
5c: SUCROSE (SUCc)
View:
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No.
Name
Count
Type
Full Name
1
DCP
3
Ligand/Ion
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
2
DOC
2
Mod. Nucleotide
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
SO4
3
Ligand/Ion
SULFATE ION
5
SUC
3
Ligand/Ion
SUCROSE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MG A:200 , HOH A:264 , HOH A:279 , ARG A:629 , GLN A:656 , HIS A:682 , ARG A:702 , LYS A:706 , PHE A:710 , HOH A:1097 , HOH A:1098 , HOH A:1099 , HOH A:1100 , HOH A:1104 , DOC B:29 , DG C:3
BINDING SITE FOR RESIDUE DCP A 201
02
AC2
SOFTWARE
GLU A:469 , GLN A:470 , ASP A:471 , ARG A:472 , LEU A:473 , LEU A:767 , HIS A:768 , HOH A:1090 , HOH A:1092
BINDING SITE FOR RESIDUE DCP A 203
03
AC3
SOFTWARE
DCP A:201 , HOH A:1098 , HOH A:1099 , HOH A:1100
BINDING SITE FOR RESIDUE MG A 200
04
AC4
SOFTWARE
HOH A:72 , HOH A:250 , HOH A:287 , GLU A:325 , TYR A:327 , ASP A:372 , ARG A:375 , LEU A:395 , ASP A:408 , ILE A:605 , ASN A:607 , HOH A:922 , HOH A:1083 , HOH A:1141
BINDING SITE FOR RESIDUE SUC A 877
05
AC5
SOFTWARE
HOH D:71 , HOH D:108 , MG D:200 , GLN D:656 , GLU D:658 , HIS D:682 , ARG D:702 , LYS D:706 , PHE D:710 , ASP D:830 , HOH D:899 , HOH D:1062 , HOH D:1101 , HOH D:1102 , HOH D:1103 , DOC E:29 , DG F:3 , DG F:4
BINDING SITE FOR RESIDUE DCP D 202
06
AC6
SOFTWARE
DCP D:202 , HOH D:1101 , HOH D:1102 , HOH D:1103
BINDING SITE FOR RESIDUE MG D 200
07
AC7
SOFTWARE
MET D:299 , ALA D:300 , ARG D:343 , ARG D:677
BINDING SITE FOR RESIDUE SO4 D 1
08
AC8
SOFTWARE
ARG D:306 , THR D:308 , GLU D:309 , HOH D:1208
BINDING SITE FOR RESIDUE SO4 D 2
09
AC9
SOFTWARE
ARG A:779 , ASN A:780 , ARG D:423 , PRO D:424
BINDING SITE FOR RESIDUE SO4 D 3
10
BC1
SOFTWARE
HOH D:8 , HOH D:69 , HOH D:78 , HOH D:94 , HOH D:220 , HOH D:265 , GLU D:325 , TYR D:327 , ASP D:372 , ARG D:375 , ASP D:408 , ILE D:605 , ASN D:607 , HOH D:998 , HOH D:1033
BINDING SITE FOR RESIDUE SUC D 877
11
BC2
SOFTWARE
HOH D:38 , HOH D:193 , HOH D:229 , HOH D:281 , ASP D:402 , GLN D:405 , MET D:416 , LYS D:417 , GLU D:464 , ARG D:846 , GLU D:850 , HOH D:913 , HOH D:918 , HOH D:920 , HOH D:927 , HOH D:1139
BINDING SITE FOR RESIDUE SUC D 878
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (236 KB)
Header - Asym.Unit
Biol.Unit 1 (116 KB)
Header - Biol.Unit 1
Biol.Unit 2 (118 KB)
Header - Biol.Unit 2
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