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3HS5
Asym. Unit
Info
Asym.Unit (345 KB)
Biol.Unit 1 (331 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF ARACHIDONIC ACID BOUND TO THE CYCLOOXYGENASE CHANNEL OF CYCLOOXYGENASE-2
Authors
:
A. J. Vecchio, D. M. Simmons, M. G. Malkowski
Date
:
10 Jun 09 (Deposition) - 12 May 10 (Release) - 04 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Dioxygenase, Disulfide Bond, Endoplasmic Reticulum, Fatty Acid Biosynthesis, Glycoprotein, Heme, Iron, Lipid Synthesis, Membrane, Metal-Binding, Microsome, Peroxidase, Phosphoprotein, Prostaglandin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Vecchio, D. M. Simmons, M. G. Malkowski
Structural Basis Of Fatty Acid Substrate Binding To Cyclooxygenase-2.
J. Biol. Chem. V. 285 22152 2010
[
close entry info
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Hetero Components
(7, 31)
Info
All Hetero Components
1a: ARACHIDONIC ACID (ACDa)
1b: ARACHIDONIC ACID (ACDb)
2a: ACRYLIC ACID (AKRa)
2b: ACRYLIC ACID (AKRb)
3a: B-OCTYLGLUCOSIDE (BOGa)
3b: B-OCTYLGLUCOSIDE (BOGb)
4a: PROTOPORPHYRIN IX CONTAINING CO (COHa)
4b: PROTOPORPHYRIN IX CONTAINING CO (COHb)
5a: 1,2-ETHANEDIOL (EDOa)
5b: 1,2-ETHANEDIOL (EDOb)
5c: 1,2-ETHANEDIOL (EDOc)
5d: 1,2-ETHANEDIOL (EDOd)
5e: 1,2-ETHANEDIOL (EDOe)
5f: 1,2-ETHANEDIOL (EDOf)
5g: 1,2-ETHANEDIOL (EDOg)
5h: 1,2-ETHANEDIOL (EDOh)
5i: 1,2-ETHANEDIOL (EDOi)
5j: 1,2-ETHANEDIOL (EDOj)
5k: 1,2-ETHANEDIOL (EDOk)
5l: 1,2-ETHANEDIOL (EDOl)
6a: ALPHA-D-MANNOSE (MANa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACD
2
Ligand/Ion
ARACHIDONIC ACID
2
AKR
2
Ligand/Ion
ACRYLIC ACID
3
BOG
2
Ligand/Ion
B-OCTYLGLUCOSIDE
4
COH
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING CO
5
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
6
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:116 , ARG A:120 , PHE A:205 , TYR A:348 , VAL A:349 , SER A:353 , TYR A:355 , TYR A:385 , TRP A:387 , VAL A:523 , GLY A:526 , SER A:530 , LEU A:531 , HOH A:806
BINDING SITE FOR RESIDUE ACD A 1
02
AC2
SOFTWARE
SER A:477 , PHE A:478 , GLU A:479 , LYS A:492
BINDING SITE FOR RESIDUE AKR A 2
03
AC3
SOFTWARE
ASP A:239 , ARG A:240 , GLN A:270 , VAL A:271 , GLU A:272
BINDING SITE FOR RESIDUE AKR A 3
04
AC4
SOFTWARE
ALA A:202 , GLN A:203 , HIS A:207 , PHE A:210 , THR A:212 , HIS A:214 , VAL A:295 , ASN A:382 , TYR A:385 , HIS A:386 , HIS A:388 , LEU A:391 , HOH A:670 , HOH A:1058 , HOH A:1345
BINDING SITE FOR RESIDUE COH A 619
05
AC5
SOFTWARE
TYR A:55 , GLU A:67 , ASN A:68 , NAG A:662 , HOH A:689 , HOH A:754
BINDING SITE FOR RESIDUE NAG A 661
06
AC6
SOFTWARE
NAG A:661 , HOH A:689
BINDING SITE FOR RESIDUE NAG A 662
07
AC7
SOFTWARE
GLU A:140 , ASN A:144 , TYR A:147 , ARG A:216 , HOH A:626 , NAG A:672 , HOH A:684 , HOH A:796 , HOH A:845
BINDING SITE FOR RESIDUE NAG A 671
08
AC8
SOFTWARE
ARG A:216 , NAG A:671 , MAN A:673 , ASP B:239
BINDING SITE FOR RESIDUE NAG A 672
09
AC9
SOFTWARE
NAG A:672
BINDING SITE FOR RESIDUE MAN A 673
10
BC1
SOFTWARE
GLN A:406 , ASN A:410 , SER A:412 , ILE A:413 , GLU A:416 , HOH A:844
BINDING SITE FOR RESIDUE NAG A 681
11
BC2
SOFTWARE
LYS A:180 , ARG A:184 , ARG A:185 , ARG A:438 , ILE A:442 , GLU A:486 , GLU A:490 , LYS B:175 , GLU B:179 , ILE B:442 , GLN B:445 , BOG B:703 , HOH B:921 , HOH B:1425
BINDING SITE FOR RESIDUE BOG A 703
12
BC3
SOFTWARE
HIS A:90 , GLN A:192 , LEU A:352 , ARG A:513 , ALA A:516 , ILE A:517 , PHE A:518 , VAL A:523
BINDING SITE FOR RESIDUE EDO A 620
13
BC4
SOFTWARE
PRO A:162 , LEU A:171 , SER A:455 , ARG A:456 , LYS A:459 , TYR A:460 , HOH A:642
BINDING SITE FOR RESIDUE EDO A 4
14
BC5
SOFTWARE
CYS A:57 , ASP A:58 , CYS A:59 , GLU B:553
BINDING SITE FOR RESIDUE EDO A 5
15
BC6
SOFTWARE
GLU A:308 , ARG A:311 , GLU A:339 , SER A:566 , LEU A:567 , ASN A:570 , HOH A:697
BINDING SITE FOR RESIDUE EDO A 12
16
BC7
SOFTWARE
PHE B:205 , PHE B:209 , TYR B:348 , VAL B:349 , TYR B:355 , ILE B:377 , PHE B:381 , TYR B:385 , ALA B:527 , SER B:530 , LEU B:531 , GLY B:533 , LEU B:534 , HOH B:778
BINDING SITE FOR RESIDUE ACD B 1
17
BC8
SOFTWARE
TYR B:148 , ALA B:199 , GLN B:203 , HIS B:207 , PHE B:210 , LYS B:211 , THR B:212 , VAL B:295 , ASN B:382 , TYR B:385 , HIS B:386 , HIS B:388 , LEU B:391 , GLN B:454
BINDING SITE FOR RESIDUE COH B 619
18
BC9
SOFTWARE
TYR B:55 , GLU B:67 , ASN B:68 , NAG B:662
BINDING SITE FOR RESIDUE NAG B 661
19
CC1
SOFTWARE
NAG B:661 , HOH B:916
BINDING SITE FOR RESIDUE NAG B 662
20
CC2
SOFTWARE
HOH B:15 , GLU B:140 , ASN B:144 , TYR B:147 , ARG B:216 , NAG B:672 , HOH B:793 , HOH B:872 , HOH B:915
BINDING SITE FOR RESIDUE NAG B 671
21
CC3
SOFTWARE
ARG B:216 , HOH B:620 , NAG B:671 , HOH B:772
BINDING SITE FOR RESIDUE NAG B 672
22
CC4
SOFTWARE
GLN B:406 , ASN B:410 , ILE B:413 , GLU B:416
BINDING SITE FOR RESIDUE NAG B 681
23
CC5
SOFTWARE
LYS A:180 , ARG A:185 , ARG A:438 , GLU A:486 , GLU A:490 , BOG A:703 , GLU B:179 , ARG B:184 , ARG B:185 , ILE B:442 , GLN B:445 , HOH B:921
BINDING SITE FOR RESIDUE BOG B 703
24
CC6
SOFTWARE
HIS B:90 , GLN B:192 , LEU B:352 , ARG B:513 , ALA B:516 , ILE B:517 , PHE B:518 , VAL B:523 , HOH B:774
BINDING SITE FOR RESIDUE EDO B 2
25
CC7
SOFTWARE
LYS B:251 , TYR B:254 , VAL B:261 , ASN B:310 , HOH B:834 , HOH B:847
BINDING SITE FOR RESIDUE EDO B 3
26
CC8
SOFTWARE
PRO B:162 , LEU B:171 , ARG B:456 , LYS B:459 , TYR B:460 , HOH B:641
BINDING SITE FOR RESIDUE EDO B 6
27
CC9
SOFTWARE
SER A:548 , MET B:48 , LYS B:56 , HOH B:889
BINDING SITE FOR RESIDUE EDO B 7
28
DC1
SOFTWARE
GLU B:308 , ARG B:311 , GLU B:339 , SER B:566 , LEU B:567 , ASN B:570 , HOH B:792
BINDING SITE FOR RESIDUE EDO B 8
29
DC2
SOFTWARE
LEU A:224 , SER B:143 , HOH B:810 , HOH B:859 , HOH B:879 , HOH B:1428
BINDING SITE FOR RESIDUE EDO B 9
30
DC3
SOFTWARE
ASP B:325 , GLU B:326 , HOH B:737 , HOH B:891
BINDING SITE FOR RESIDUE EDO B 10
31
DC4
SOFTWARE
ARG B:240 , LYS B:243 , GLN B:270 , VAL B:271 , GLU B:272
BINDING SITE FOR RESIDUE EDO B 11
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:110-583,B:110-582)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
2
A:110-583
B:110-582
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3hs5B02 (B:74-582)
1b: CATH_3hs5A02 (A:74-583)
2a: CATH_3hs5A01 (A:33-73)
2b: CATH_3hs5B01 (B:33-73)
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Classes
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Myeloperoxidase, subunit C
(39)
Homologous Superfamily
:
Myeloperoxidase, subunit C
(39)
Mouse (Mus musculus)
(4)
1a
3hs5B02
B:74-582
1b
3hs5A02
A:74-583
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Mouse (Mus musculus)
(6)
2a
3hs5A01
A:33-73
2b
3hs5B01
B:33-73
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (345 KB)
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