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3HS0
Biol. Unit 2
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Asym.Unit (1.3 MB)
Biol.Unit 1 (664 KB)
Biol.Unit 2 (658 KB)
Biol.Unit 3, α-C (1.3 MB)
Biol.Unit 3 (1.3 MB)
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(1)
Title
:
COBRA VENOM FACTOR (CVF) IN COMPLEX WITH HUMAN FACTOR B
Authors
:
B. J. C. Janssen, L. Gomes, R. I. Koning, D. I. Svergun, A. J. Koster, D. C. Fritzinger, C. -W. Vogel, P. Gros
Date
:
10 Jun 09 (Deposition) - 07 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,F,G,H,I
Biol. Unit 1: F,G,H,I (1x)
Biol. Unit 2: A,B,C,D (1x)
Biol. Unit 3: A,B,C,D,F,G,H,I (1x)
Keywords
:
Serine Protease, Glycosilated, Multi-Domain, Complement System, Convertase, Complement Alternate Pathway, Complement Pathway, Disulfide Bond, Glycoprotein, Immune Response, Inflammatory Response, Innate Immunity, Secreted, Thioester Bond, Cleavage On Pair Of Basic Residues, Glycation, Hydrolase, Protease, Sushi, Zymogen, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
B. J. Janssen, L. Gomes, R. I. Koning, D. I. Svergun, A. J. Koster, D. C. Fritzinger, C. W. Vogel, P. Gros
Insights Into Complement Convertase Formation Based On The Structure Of The Factor B-Cobra Venom Factor Complex
Embo J. V. 28 2469 2009
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:142 , LYS A:180 , ASN A:187
BINDING SITE FOR RESIDUE NAG A 9187
2
AC2
SOFTWARE
PRO A:494 , ASP A:517 , VAL A:518 , ASP A:520 , HOH A:629 , HOH A:630
BINDING SITE FOR RESIDUE MG A 628
3
AC3
SOFTWARE
ASN C:1324 , ASP C:1413 , LYS I:294
BINDING SITE FOR RESIDUE NAG C 9324
4
AC4
SOFTWARE
ALA D:75 , TYR D:95 , ASN D:97 , ASP D:100 , NAG D:9098
BINDING SITE FOR RESIDUE NAG D 9097
5
AC5
SOFTWARE
NAG D:9097
BINDING SITE FOR RESIDUE NAG D 9098
6
AC6
SOFTWARE
GLU D:101 , ASN D:117
BINDING SITE FOR RESIDUE NAG D 9117
7
AC7
SOFTWARE
ASN D:353
BINDING SITE FOR RESIDUE NAG D 9353
8
AC8
SOFTWARE
HOH C:32 , THR C:1620 , SER D:253 , SER D:255 , THR D:328 , HOH D:743
BINDING SITE FOR RESIDUE MG D 742
9
BC2
SOFTWARE
LYS D:294 , ASN H:1324
BINDING SITE FOR RESIDUE NAG H 9324
[
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SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_063659 (S141P, chain D, )
2: VAR_063660 (R178Q, chain D, )
3: VAR_063221 (F261L, chain D, )
4: VAR_063222 (K298E, chain D, )
5: VAR_063662 (K298Q, chain D, )
6: VAR_063663 (M433I, chain D, )
7: VAR_016277 (K540E, chain D, )
8: VAR_016278 (D626E, chain D, )
9: VAR_006495 (A711S, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063659
S
166
P
CFAB_HUMAN
Disease (AHUS4)
---
D
S
141
P
2
UniProt
VAR_063660
R
203
Q
CFAB_HUMAN
Disease (AHUS4)
---
D
R
178
Q
3
UniProt
VAR_063221
F
286
L
CFAB_HUMAN
Disease (AHUS4)
---
D
F
261
L
4
UniProt
VAR_063222
K
323
E
CFAB_HUMAN
Disease (AHUS4)
---
D
K
298
E
5
UniProt
VAR_063662
K
323
Q
CFAB_HUMAN
Disease (AHUS4)
---
D
K
298
Q
6
UniProt
VAR_063663
M
458
I
CFAB_HUMAN
Disease (AHUS4)
---
D
M
433
I
7
UniProt
VAR_016277
K
565
E
CFAB_HUMAN
Polymorphism
4151659
D
K
540
E
8
UniProt
VAR_016278
D
651
E
CFAB_HUMAN
Polymorphism
4151660
D
D
626
E
9
UniProt
VAR_006495
A
736
S
CFAB_HUMAN
Polymorphism
---
D
A
711
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(6, 7)
Info
All PROSITE Patterns/Profiles
1: SUSHI ()
2: VWFA (D:245-444)
3: TRYPSIN_DOM (D:452-732)
4: TRYPSIN_HIS (D:497-502)
5: TRYPSIN_SER (D:668-679)
6: NTR (C:1475-1618)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CFAB_HUMAN
35-100
101-160
163-220
2
-
D:76-135
-
D:138-195
-
2
VWFA
PS50234
VWFA domain profile.
CFAB_HUMAN
270-469
1
D:245-444
-
3
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
CFAB_HUMAN
477-757
1
D:452-732
-
4
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
CFAB_HUMAN
522-527
1
D:497-502
-
5
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
CFAB_HUMAN
693-704
1
D:668-679
-
6
NTR
PS50189
NTR domain profile.
VCO3_NAJKA
1497-1640
1
C:1475-1618
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Chain C
Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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