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3HRZ
Asym. Unit
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Asym.Unit (663 KB)
Biol.Unit 1 (652 KB)
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(1)
Title
:
COBRA VENOM FACTOR (CVF) IN COMPLEX WITH HUMAN FACTOR B
Authors
:
B. J. C. Janssen, L. Gomes, R. I. Koning, D. I. Svergun, A. J. Koster, D. C. Fritzinger, C. -W. Vogel, P. Gros
Date
:
10 Jun 09 (Deposition) - 07 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Serine Protease, Glycosilated, Multi-Domain, Complement System, Convertase, Complement Alternate Pathway, Complement Pathway, Disulfide Bond, Glycoprotein, Immune Response, Inflammatory Response, Innate Immunity, Secreted, Thioester Bond, Cleavage On Pair Of Basic Residues, Glycation, Hydrolase, Protease, Sushi, Zymogen, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Janssen, L. Gomes, R. I. Koning, D. I. Svergun, A. J. Koster, D. C. Fritzinger, C. W. Vogel, P. Gros
Insights Into Complement Convertase Formation Based On The Structure Of The Factor B-Cobra Venom Factor Complex
Embo J. V. 28 2469 2009
[
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4a: HEXAETHYLENE GLYCOL (P6Ga)
4b: HEXAETHYLENE GLYCOL (P6Gb)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
5e: PHOSPHATE ION (PO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
1
Ligand/Ion
POTASSIUM ION
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
P6G
2
Ligand/Ion
HEXAETHYLENE GLYCOL
5
PO4
5
Ligand/Ion
PHOSPHATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:142 , LYS A:180 , ASN A:187
BINDING SITE FOR RESIDUE NAG A 9187
02
AC2
SOFTWARE
PRO A:494 , ASP A:517 , VAL A:518 , ASP A:520 , HOH A:631 , HOH A:633
BINDING SITE FOR RESIDUE MG A 628
03
AC3
SOFTWARE
PHE A:240 , SER A:295 , VAL A:296 , THR A:297 , TYR C:1439
BINDING SITE FOR RESIDUE K A 629
04
AC4
SOFTWARE
ILE B:942 , GLN B:944 , PHE C:1306
BINDING SITE FOR RESIDUE P6G A 630
05
AC5
SOFTWARE
LYS A:252 , ARG A:280 , HOH B:414 , LYS B:907 , LYS C:1298
BINDING SITE FOR RESIDUE PO4 B 202
06
AC6
SOFTWARE
HOH C:515 , HOH C:747 , ASN C:1324 , SER C:1326 , CYS C:1346 , LYS D:294 , ASP D:321
BINDING SITE FOR RESIDUE NAG C 9324
07
AC7
SOFTWARE
ASP A:305 , MET A:306 , TYR C:1437 , LEU C:1442 , GLU C:1444 , LYS C:1445
BINDING SITE FOR RESIDUE P6G C 100
08
AC8
SOFTWARE
HOH C:536 , HOH C:722 , LYS C:1505 , ASP C:1558 , HIS C:1590 , GLU C:1591
BINDING SITE FOR RESIDUE PO4 C 200
09
AC9
SOFTWARE
SER D:93 , TYR D:95 , ASN D:97 , ASP D:100 , NAG D:9098
BINDING SITE FOR RESIDUE NAG D 9097
10
BC1
SOFTWARE
TYR D:95 , NAG D:9097
BINDING SITE FOR RESIDUE NAG D 9098
11
BC2
SOFTWARE
ASN D:117 , HOH D:905
BINDING SITE FOR RESIDUE NAG D 9117
12
BC3
SOFTWARE
THR C:1620 , SER D:253 , SER D:255 , THR D:328 , HOH D:746 , HOH D:747
BINDING SITE FOR RESIDUE MG D 742
13
BC4
SOFTWARE
ARG B:888 , ARG D:80 , HIS D:82 , SER D:167 , HOH D:772 , HOH D:947 , HOH D:971
BINDING SITE FOR RESIDUE PO4 D 743
14
BC5
SOFTWARE
LYS D:604 , HIS D:681
BINDING SITE FOR RESIDUE PO4 D 744
15
BC6
SOFTWARE
SER D:212 , ARG D:356 , ASP D:396 , LYS D:421 , GLU D:424 , HOH D:917 , HOH D:918 , HOH D:919
BINDING SITE FOR RESIDUE PO4 D 745
[
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SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_063659 (S141P, chain D, )
2: VAR_063660 (R178Q, chain D, )
3: VAR_063221 (F261L, chain D, )
4: VAR_063222 (K298E, chain D, )
5: VAR_063662 (K298Q, chain D, )
6: VAR_063663 (M433I, chain D, )
7: VAR_016277 (K540E, chain D, )
8: VAR_016278 (D626E, chain D, )
9: VAR_006495 (A711S, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063659
S
166
P
CFAB_HUMAN
Disease (AHUS4)
---
D
S
141
P
2
UniProt
VAR_063660
R
203
Q
CFAB_HUMAN
Disease (AHUS4)
---
D
R
178
Q
3
UniProt
VAR_063221
F
286
L
CFAB_HUMAN
Disease (AHUS4)
---
D
F
261
L
4
UniProt
VAR_063222
K
323
E
CFAB_HUMAN
Disease (AHUS4)
---
D
K
298
E
5
UniProt
VAR_063662
K
323
Q
CFAB_HUMAN
Disease (AHUS4)
---
D
K
298
Q
6
UniProt
VAR_063663
M
458
I
CFAB_HUMAN
Disease (AHUS4)
---
D
M
433
I
7
UniProt
VAR_016277
K
565
E
CFAB_HUMAN
Polymorphism
4151659
D
K
540
E
8
UniProt
VAR_016278
D
651
E
CFAB_HUMAN
Polymorphism
4151660
D
D
626
E
9
UniProt
VAR_006495
A
736
S
CFAB_HUMAN
Polymorphism
---
D
A
711
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(6, 7)
Info
All PROSITE Patterns/Profiles
1: SUSHI (-|D:76-135|D:138-195)
2: VWFA (D:245-444)
3: TRYPSIN_DOM (D:452-732)
4: TRYPSIN_HIS (D:497-502)
5: TRYPSIN_SER (D:668-679)
6: NTR (C:1475-1618)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CFAB_HUMAN
35-100
101-160
163-220
2
-
D:76-135
D:138-195
2
VWFA
PS50234
VWFA domain profile.
CFAB_HUMAN
270-469
1
D:245-444
3
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
CFAB_HUMAN
477-757
1
D:452-732
4
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
CFAB_HUMAN
522-527
1
D:497-502
5
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
CFAB_HUMAN
693-704
1
D:668-679
6
NTR
PS50189
NTR domain profile.
VCO3_NAJKA
1497-1640
1
C:1475-1618
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Chain D
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Asym.Unit (663 KB)
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