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Asym. Unit
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Asym.Unit (68 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
DISCOVERY OF NOVEL INHIBITORS OF PDE10A
Authors
:
J. Pandit, E. S. Marr
Date
:
08 Jun 09 (Deposition) - 04 Aug 09 (Release) - 22 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Phosphodiesterase 10A Pde10A Pde Inhibitors, Allosteric Enzyme, Alternative Splicing, Camp, Camp-Binding, Cgmp, Cgmp-Binding, Cytoplasm, Hydrolase, Magnesium, Metal- Binding, Nucleotide-Binding, Zinc, Hydrolase/Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. R. Verhoest, D. S. Chapin, M. Corman, K. Fonseca, J. F. Harms, X. Hou, E. S. Marr, F. S. Menniti, F. Nelson, R. O'Connor, J. Pandit, C. Proulx-Lafrance, A. W. Schmidt, C. J. Schmidt, J. A. Suiciak, S. Liras
Discovery Of A Novel Class Of Phosphodiesterase 10A Inhibitors And Identification Of Clinical Candidate 2-[4-(1-Methyl-4-Pyridin-4-Yl-1H-Pyrazol-3-Yl)- Phenoxymethyl]-Quinoline (Pf-2545920) For The Treatment Of Schizophrenia
J. Med. Chem. V. 52 5188 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: 4,5-BIS(4-METHOXYPHENYL)-2-THIOPHE... (PF4a)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
1
Ligand/Ion
MAGNESIUM ION
2
PF4
1
Ligand/Ion
4,5-BIS(4-METHOXYPHENYL)-2-THIOPHEN-2-YL-1H-IMIDAZOLE
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:519 , HIS A:553 , ASP A:554 , ASP A:664 , HOH A:938
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
ASP A:554 , HOH A:805 , HOH A:920 , HOH A:938
BINDING SITE FOR RESIDUE MG A 2
3
AC3
SOFTWARE
HOH A:26 , HIS A:647 , VAL A:668 , ILE A:682 , TYR A:683 , MET A:703 , LYS A:708 , GLY A:715 , GLN A:716 , PHE A:719 , VAL A:723 , HOH A:937 , HOH A:945
BINDING SITE FOR RESIDUE PF4 A 999
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDEASE_I (A:553-564)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDEASE_I
PS00126
3'5'-cyclic nucleotide phosphodiesterases signature.
PDE10_RAT
563-574
1
A:553-564
[
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Exons
(9, 9)
Info
All Exons
Exon 1.20 (A:455-464)
Exon 1.21 (A:464-492)
Exon 1.22 (A:492-542)
Exon 1.23 (A:543-594)
Exon 1.24 (A:595-652)
Exon 1.25 (A:652-689)
Exon 1.26 (A:690-716)
Exon 1.27 (A:717-746)
Exon 1.28b (A:746-757)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.19/1.20
02: Boundary 1.20/1.21
03: Boundary 1.21/1.22
04: Boundary 1.22/1.23
05: Boundary 1.23/1.24
06: Boundary 1.24/1.25
07: Boundary 1.25/1.26
08: Boundary 1.26/1.27
09: Boundary 1.27/1.28b
10: Boundary 1.28b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4
ENSRNOT00000043474
4
ENSRNOE00000249346
chr1:
46589078-46588743
336
PDE10_RAT
1-23
23
0
-
-
1.8
ENSRNOT00000043474
8
ENSRNOE00000113838
chr1:
46489570-46489442
129
PDE10_RAT
23-66
44
0
-
-
1.9
ENSRNOT00000043474
9
ENSRNOE00000113971
chr1:
46469438-46469410
29
PDE10_RAT
66-75
10
0
-
-
1.10
ENSRNOT00000043474
10
ENSRNOE00000111664
chr1:
46460575-46460455
121
PDE10_RAT
76-116
41
0
-
-
1.11
ENSRNOT00000043474
11
ENSRNOE00000107317
chr1:
46459115-46459066
50
PDE10_RAT
116-132
17
0
-
-
1.12
ENSRNOT00000043474
12
ENSRNOE00000111917
chr1:
46434039-46433899
141
PDE10_RAT
133-179
47
0
-
-
1.13
ENSRNOT00000043474
13
ENSRNOE00000107591
chr1:
46432311-46432156
156
PDE10_RAT
180-231
52
0
-
-
1.14
ENSRNOT00000043474
14
ENSRNOE00000107720
chr1:
46430918-46430868
51
PDE10_RAT
232-248
17
0
-
-
1.15
ENSRNOT00000043474
15
ENSRNOE00000107853
chr1:
46430355-46430297
59
PDE10_RAT
249-268
20
0
-
-
1.16
ENSRNOT00000043474
16
ENSRNOE00000107981
chr1:
46428492-46428441
52
PDE10_RAT
268-285
18
0
-
-
1.17
ENSRNOT00000043474
17
ENSRNOE00000108113
chr1:
46425955-46425813
143
PDE10_RAT
286-333
48
0
-
-
1.18
ENSRNOT00000043474
18
ENSRNOE00000108232
chr1:
46423782-46423690
93
PDE10_RAT
333-364
32
0
-
-
1.19
ENSRNOT00000043474
19
ENSRNOE00000108353
chr1:
46421634-46421448
187
PDE10_RAT
364-426
63
0
-
-
1.20
ENSRNOT00000043474
20
ENSRNOE00000108481
chr1:
46413380-46413238
143
PDE10_RAT
427-474
48
1
A:455-464
10
1.21
ENSRNOT00000043474
21
ENSRNOE00000108623
chr1:
46412407-46412324
84
PDE10_RAT
474-502
29
1
A:464-492
29
1.22
ENSRNOT00000043474
22
ENSRNOE00000112176
chr1:
46410141-46409991
151
PDE10_RAT
502-552
51
1
A:492-542
51
1.23
ENSRNOT00000043474
23
ENSRNOE00000112438
chr1:
46407274-46407119
156
PDE10_RAT
553-604
52
1
A:543-594
52
1.24
ENSRNOT00000043474
24
ENSRNOE00000112694
chr1:
46405154-46404982
173
PDE10_RAT
605-662
58
1
A:595-652
58
1.25
ENSRNOT00000043474
25
ENSRNOE00000109171
chr1:
46400108-46399997
112
PDE10_RAT
662-699
38
1
A:652-689
38
1.26
ENSRNOT00000043474
26
ENSRNOE00000109311
chr1:
46397919-46397839
81
PDE10_RAT
700-726
27
1
A:690-716
27
1.27
ENSRNOT00000043474
27
ENSRNOE00000109437
chr1:
46396042-46395954
89
PDE10_RAT
727-756
30
1
A:717-746
30
1.28b
ENSRNOT00000043474
28b
ENSRNOE00000358624
chr1:
46393765-46392900
866
PDE10_RAT
756-794
39
1
A:746-757
12
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3hqwa_ (A:)
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(
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
HD-domain/PDEase-like
(204)
Superfamily
:
HD-domain/PDEase-like
(204)
Family
:
automated matches
(60)
Protein domain
:
automated matches
(60)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(11)
1a
d3hqwa_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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