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Asym. Unit
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Asym.Unit (60 KB)
Biol.Unit 1 (29 KB)
Biol.Unit 2 (29 KB)
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(1)
Title
:
STRUCTURES OF SPOP-SUBSTRATE COMPLEXES: INSIGHTS INTO MOLECULAR ARCHITECTURES OF BTB-CUL3 UBIQUITIN LIGASES: SPOPMATHX-CISBC2
Authors
:
M. Zhuang, B. A. Schulman
Date
:
07 Jun 09 (Deposition) - 20 Oct 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.74
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Ubiquitin, E3, Spop, Math, Ci, Nucleus, Ubl Conjugation Pathway, Developmental Protein, Dna-Binding, Metal-Binding, Segmentation Polarity Protein, Zinc-Finger, Protein Binding, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Zhuang, M. F. Calabrese, J. Liu, M. B. Waddell, A. Nourse, M. Hammel, D. J. Miller, H. Walden, D. M. Duda, S. N. Seyedin, T. Hoggard, J. W. Harper, K. P. White, B. A. Schulman
Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases.
Mol. Cell V. 36 39 2009
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
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No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:13 , CYS A:44 , ARG A:45 , GLU A:46 , HOH A:334 , ARG B:138
BINDING SITE FOR RESIDUE SO4 A 1
2
AC2
SOFTWARE
ILE A:137 , ARG A:138 , HOH B:16 , CYS B:44 , ARG B:45 , GLU B:46 , HOH B:167
BINDING SITE FOR RESIDUE SO4 B 2
3
AC3
SOFTWARE
HOH A:208 , HOH A:215 , HOH A:273 , HOH A:322 , HOH B:5 , TYR B:34 , TRP B:36 , SER B:54 , SER B:55 , HOH B:247
BINDING SITE FOR RESIDUE SO4 B 3
4
AC4
SOFTWARE
HOH A:6 , TYR A:34 , TRP A:36 , SER A:54 , SER A:55 , HOH A:195 , HOH A:248 , HOH A:318
BINDING SITE FOR RESIDUE SO4 A 4
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MATH (A:31-161,B:31-161)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MATH
PS50144
MATH/TRAF domain profile.
SPOP_HUMAN
31-161
2
A:31-161
B:31-161
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Exons
(4, 8)
Info
All Exons
Exon 1.10d (A:28-67 (gaps) | B:29-67 (gaps))
Exon 1.12c (A:67-118 (gaps) | B:67-118)
Exon 1.13b (A:118-160 | B:118-160)
Exon 1.16c (A:161-165 | B:161-164)
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All Exon Boundaries
1: Boundary 1.8d/1.10d
2: Boundary 1.10d/1.12c
3: Boundary 1.12c/1.13b
4: Boundary 1.13b/1.16c
5: Boundary 1.16c/1.17
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000393328
1d
ENSE00002053260
chr17:
47755472-47755295
178
SPOP_HUMAN
-
0
0
-
-
1.2
ENST00000393328
2
ENSE00002056951
chr17:
47753378-47753257
122
SPOP_HUMAN
-
0
0
-
-
1.8d
ENST00000393328
8d
ENSE00002153086
chr17:
47700238-47700095
144
SPOP_HUMAN
1-26
26
0
-
-
1.10d
ENST00000393328
10d
ENSE00002189108
chr17:
47699429-47699308
122
SPOP_HUMAN
27-67
41
2
A:28-67 (gaps)
B:29-67 (gaps)
40
39
1.12c
ENST00000393328
12c
ENSE00002169279
chr17:
47696747-47696596
152
SPOP_HUMAN
67-118
52
2
A:67-118 (gaps)
B:67-118
52
52
1.13b
ENST00000393328
13b
ENSE00001746781
chr17:
47696470-47696343
128
SPOP_HUMAN
118-160
43
2
A:118-160
B:118-160
43
43
1.16c
ENST00000393328
16c
ENSE00000819785
chr17:
47688819-47688642
178
SPOP_HUMAN
161-220
60
2
A:161-165
B:161-164
5
4
1.17
ENST00000393328
17
ENSE00002159579
chr17:
47685291-47685236
56
SPOP_HUMAN
220-238
19
0
-
-
1.18b
ENST00000393328
18b
ENSE00000819783
chr17:
47684734-47684612
123
SPOP_HUMAN
239-279
41
0
-
-
1.19b
ENST00000393328
19b
ENSE00000736281
chr17:
47679369-47679227
143
SPOP_HUMAN
280-327
48
0
-
-
1.20g
ENST00000393328
20g
ENSE00002070429
chr17:
47677884-47676246
1639
SPOP_HUMAN
327-374
48
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3hqma_ (A:)
1b: SCOP_d3hqmb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
TRAF domain-like
(34)
Superfamily
:
TRAF domain-like
(34)
Family
:
MATH domain
(26)
Protein domain
:
Speckle-type poz protein SPOP
(8)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d3hqma_
A:
1b
d3hqmb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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