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3HPY
Asym. Unit
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Asym.Unit (201 KB)
Biol.Unit 1 (196 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE 2,3-DIOXYGENASE LAPB FROM PSEUDOMONAS IN THE COMPLEX WITH 4-METHYLCATECHOL
Authors
:
J. -H. Cho, S. Rhee
Date
:
05 Jun 09 (Deposition) - 20 Oct 09 (Release) - 12 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.94
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Repeated Motifs, Aromatic Hydrocarbons Catabolism, Dioxygenase, Iron, Oxidoreductase
(Keyword Search:
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Reference
:
J. -H. Cho, D. -K. Jung, K. Lee, S. Rhee
Crystal Structure And Functional Analysis Of The Extradiol Dioxygenase Lapb From A Long-Chain Alkylphenol Degradation Pathway In Pseudomonas
J. Biol. Chem. V. 284 34321 2009
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
2a: 4-METHYLCATECHOL (MCTa)
2b: 4-METHYLCATECHOL (MCTb)
2c: 4-METHYLCATECHOL (MCTc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
4
Ligand/Ion
FE (III) ION
2
MCT
3
Ligand/Ion
4-METHYLCATECHOL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:154 , HIS A:216 , GLU A:267 , MCT A:311
BINDING SITE FOR RESIDUE FE A 310
2
AC2
SOFTWARE
HIS A:154 , TRP A:193 , HIS A:201 , HIS A:216 , HIS A:248 , VAL A:250 , THR A:251 , TYR A:257 , GLU A:267 , FE A:310
BINDING SITE FOR RESIDUE MCT A 311
3
AC3
SOFTWARE
HIS B:154 , HIS B:216 , GLU B:267 , MCT B:311
BINDING SITE FOR RESIDUE FE B 310
4
AC4
SOFTWARE
HIS B:154 , TRP B:193 , HIS B:201 , HIS B:216 , HIS B:248 , VAL B:250 , THR B:251 , TYR B:257 , GLU B:267 , FE B:310
BINDING SITE FOR RESIDUE MCT B 311
5
AC5
SOFTWARE
HIS C:154 , HIS C:216 , GLU C:267 , MCT C:311
BINDING SITE FOR RESIDUE FE C 310
6
AC6
SOFTWARE
HIS C:154 , TRP C:193 , HIS C:201 , HIS C:216 , HIS C:248 , VAL C:250 , THR C:251 , TYR C:257 , GLU C:267 , FE C:310
BINDING SITE FOR RESIDUE MCT C 311
7
AC7
SOFTWARE
HIS D:154 , HIS D:216 , SER D:218 , GLU D:267
BINDING SITE FOR RESIDUE FE D 310
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3hpya1 (A:2-146)
1b: SCOP_d3hpyb1 (B:2-146)
1c: SCOP_d3hpyb2 (B:147-289)
1d: SCOP_d3hpyc1 (C:2-146)
1e: SCOP_d3hpyc2 (C:147-297)
1f: SCOP_d3hpyd1 (D:2-146)
1g: SCOP_d3hpyd2 (D:147-297)
1h: SCOP_d3hpya2 (A:147-289)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
automated matches
(34)
Protein domain
:
automated matches
(34)
Pseudomonas sp. [TaxId: 237609]
(3)
1a
d3hpya1
A:2-146
1b
d3hpyb1
B:2-146
1c
d3hpyb2
B:147-289
1d
d3hpyc1
C:2-146
1e
d3hpyc2
C:147-297
1f
d3hpyd1
D:2-146
1g
d3hpyd2
D:147-297
1h
d3hpya2
A:147-289
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3hpyA02 (A:151-289)
1b: CATH_3hpyB02 (B:151-289)
1c: CATH_3hpyA01 (A:2-150)
1d: CATH_3hpyB01 (B:2-150)
1e: CATH_3hpyC01 (C:2-150)
1f: CATH_3hpyD01 (D:2-150)
1g: CATH_3hpyC02 (C:151-297)
1h: CATH_3hpyD02 (D:151-297)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
(113)
Homologous Superfamily
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
(106)
Kl28 (Pseudomonas sp)
(3)
1a
3hpyA02
A:151-289
1b
3hpyB02
B:151-289
1c
3hpyA01
A:2-150
1d
3hpyB01
B:2-150
1e
3hpyC01
C:2-150
1f
3hpyD01
D:2-150
1g
3hpyC02
C:151-297
1h
3hpyD02
D:151-297
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Pfam Domains
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Asymmetric Unit 1
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