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3HPG
Biol. Unit 3
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Asym.Unit (558 KB)
Biol.Unit 1 (365 KB)
Biol.Unit 2 (363 KB)
Biol.Unit 3 (370 KB)
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Title
:
VISNA VIRUS INTEGRASE (RESIDUES 1-219) IN COMPLEX WITH LEDGF IBD: EXAMPLES OF OPEN INTEGRASE DIMER-DIMER INTERFACES
Authors
:
S. Hare, A. Labeja, P. Cherepanov
Date
:
04 Jun 09 (Deposition) - 28 Jul 09 (Release) - 04 Aug 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.28
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,E,F,G,H,K,L (1x)
Biol. Unit 2: C,D,E,F,I,J,K,L (1x)
Biol. Unit 3: A,B,C,D,G,H,I,J (1x)
Keywords
:
Protein-Protein Complex, Tetramer, Dna Integration, Endonuclease, Magnesium, Metal-Binding, Multifunctional Enzyme, Nuclease, Nucleotidyltransferase, Nucleus, Transferase, Viral Nucleoprotein, Virion, Zinc, Dna- Binding, Host-Virus Interaction, Transcription, Transcription Regulation, Zinc Binding, Hhcc Motif, Viral Protein, Recombination
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Hare, F. Di Nunzio, A. Labeja, J. Wang, A. Engelman, P. Cherepanov
Structural Basis For Functional Tetramerization Of Lentiviral Integrase
Plos Pathog. V. 5 E1000 2009
(for further references see the
PDB file header
)
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Hetero Components
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All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:12 , HIS A:16 , CYS A:40 , CYS A:43
BINDING SITE FOR RESIDUE ZN A 220
2
AC2
SOFTWARE
HIS B:12 , HIS B:16 , CYS B:40 , CYS B:43
BINDING SITE FOR RESIDUE ZN B 220
3
AC3
SOFTWARE
HIS C:12 , HIS C:16 , CYS C:40 , CYS C:43
BINDING SITE FOR RESIDUE ZN C 220
4
AC4
SOFTWARE
HIS D:12 , HIS D:16 , CYS D:40 , CYS D:43
BINDING SITE FOR RESIDUE ZN D 220
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PROSITE Patterns/Profiles
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1: ZF_INTEGRASE (D:3-44)
2: INTEGRASE (A:45-205,B:45-205,C:45-205,D:45-20...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_INTEGRASE
PS50876
Zinc finger integrase-type profile.
POL_VILVK
823-864
1
D:3-44
-
-
2
INTEGRASE
PS50994
Integrase catalytic domain profile.
POL_VILVK
865-1025
4
A:45-205
B:45-205
C:45-205
D:45-205
-
-
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Asym.Unit (558 KB)
Header - Asym.Unit
Biol.Unit 1 (365 KB)
Header - Biol.Unit 1
Biol.Unit 2 (363 KB)
Header - Biol.Unit 2
Biol.Unit 3 (370 KB)
Header - Biol.Unit 3
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