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3HO5
Biol. Unit 2
Info
Asym.Unit (177 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (99 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HEDGEHOG-INTERACTING PROTEIN (HHIP) AND SONIC HEDGEHOG (SHH) COMPLEX
Authors
:
S. G. Hymowitz, I. Bosanac
Date
:
01 Jun 09 (Deposition) - 23 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.01
Chains
:
Asym. Unit : A,B,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B,H (1x)
Keywords
:
Receptor Ectodomain, Six-Bladed-Propeller Domain, Egf Domain, Disulfide Bond, Calcium Cation, Zinc Cation, Cell Membrane, Egf-Like Domain, Glycoprotein, Membrane, Secreted, Autocatalytic Cleavage, Developmental Protein, Disease Mutation, Holoprosencephaly, Hydrolase, Lipoprotein, Microphthalmia, Palmitate, Protease, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Bosanac, H. R. Maun, S. J. Scales, X. Wen, A. Lingel, J. F. Bazan, F. J. De Sauvage, S. G. Hymowitz, R. A. Lazarus
The Structure Of Shh In Complex With Hhip Reveals A Recognition Role For The Shh Pseudo Active Site In Signaling.
Nat. Struct. Mol. Biol. V. 16 691 2009
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
Sorry, no Info available
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:383 , HIS H:140 , ASP H:147 , HIS H:182
BINDING SITE FOR RESIDUE ZN H 400
2
AC2
SOFTWARE
GLU H:89 , GLU H:90 , ASP H:95 , THR H:125 , GLU H:126
BINDING SITE FOR RESIDUE CA H 401
3
AC3
SOFTWARE
GLU H:90 , GLU H:126 , ASP H:129 , ASP H:131
BINDING SITE FOR RESIDUE CA H 402
[
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SAPs(SNPs)/Variants
(34, 34)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_062594 (L39P, chain H, )
02: VAR_062595 (E53K, chain H, )
03: VAR_062596 (D83V, chain H, )
04: VAR_062597 (I84F, chain H, )
05: VAR_009163 (D88V, chain H, )
06: VAR_009164 (Q100H, chain H, )
07: VAR_062598 (C102R, chain H, )
08: VAR_062599 (C102Y, chain H, )
09: VAR_062600 (L109F, chain H, )
10: VAR_023806 (A110D, chain H, )
11: VAR_062601 (A110T, chain H, )
12: VAR_017883 (I111F, chain H, )
13: VAR_039889 (I111N, chain H, )
14: VAR_009165 (N115K, chain H, )
15: VAR_003620 (W117G, chain H, )
16: VAR_003621 (W117R, chain H, )
17: VAR_062602 (V124M, chain H, )
18: VAR_062603 (E136K, chain H, )
19: VAR_039890 (H140P, chain H, )
20: VAR_039891 (H140Q, chain H, )
21: VAR_062604 (G143D, chain H, )
22: VAR_062605 (R144P, chain H, )
23: VAR_062606 (D147N, chain H, )
24: VAR_062607 (T150K, chain H, )
25: VAR_023807 (T150R, chain H, )
26: VAR_062608 (S156R, chain H, )
27: VAR_062609 (F170C, chain H, )
28: VAR_062610 (D171H, chain H, )
29: VAR_039892 (C183F, chain H, )
30: VAR_062611 (C183R, chain H, )
31: VAR_062612 (C183Y, chain H, )
32: VAR_062613 (S184L, chain H, )
33: VAR_009166 (E188Q, chain H, )
34: VAR_021518 (V341I, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_062594
L
39
P
SHH_HUMAN
Disease (HPE3)
---
H
L
39
P
02
UniProt
VAR_062595
E
53
K
SHH_HUMAN
Disease (HPE3)
---
H
E
53
K
03
UniProt
VAR_062596
D
83
V
SHH_HUMAN
Disease (HPE3)
---
H
D
83
V
04
UniProt
VAR_062597
I
84
F
SHH_HUMAN
Disease (HPE3)
---
H
I
84
F
05
UniProt
VAR_009163
D
88
V
SHH_HUMAN
Disease (HPE3)
---
H
D
88
V
06
UniProt
VAR_009164
Q
100
H
SHH_HUMAN
Disease (HPE3)
---
H
Q
100
H
07
UniProt
VAR_062598
C
102
R
SHH_HUMAN
Disease (HPE3)
---
H
C
102
R
08
UniProt
VAR_062599
C
102
Y
SHH_HUMAN
Disease (HPE3)
---
H
C
102
Y
09
UniProt
VAR_062600
L
109
F
SHH_HUMAN
Disease (HPE3)
---
H
L
109
F
10
UniProt
VAR_023806
A
110
D
SHH_HUMAN
Disease (HPE3)
---
H
A
110
D
11
UniProt
VAR_062601
A
110
T
SHH_HUMAN
Disease (HPE3)
---
H
A
110
T
12
UniProt
VAR_017883
I
111
F
SHH_HUMAN
Disease (SMMCI)
---
H
I
111
F
13
UniProt
VAR_039889
I
111
N
SHH_HUMAN
Disease (HPE3)
---
H
I
111
N
14
UniProt
VAR_009165
N
115
K
SHH_HUMAN
Disease (HPE3)
---
H
N
115
K
15
UniProt
VAR_003620
W
117
G
SHH_HUMAN
Disease (HPE3)
---
H
W
117
G
16
UniProt
VAR_003621
W
117
R
SHH_HUMAN
Disease (HPE3)
---
H
W
117
R
17
UniProt
VAR_062602
V
124
M
SHH_HUMAN
Disease (HPE3)
---
H
V
124
M
18
UniProt
VAR_062603
E
136
K
SHH_HUMAN
Disease (HPE3)
---
H
E
136
K
19
UniProt
VAR_039890
H
140
P
SHH_HUMAN
Disease (HPE3)
---
H
H
140
P
20
UniProt
VAR_039891
H
140
Q
SHH_HUMAN
Disease (HPE3)
---
H
H
140
Q
21
UniProt
VAR_062604
G
143
D
SHH_HUMAN
Disease (HPE3)
---
H
G
143
D
22
UniProt
VAR_062605
R
144
P
SHH_HUMAN
Disease (HPE3)
---
H
R
144
P
23
UniProt
VAR_062606
D
147
N
SHH_HUMAN
Disease (HPE3)
---
H
D
147
N
24
UniProt
VAR_062607
T
150
K
SHH_HUMAN
Disease (HPE3)
---
H
T
150
K
25
UniProt
VAR_023807
T
150
R
SHH_HUMAN
Disease (HPE3)
---
H
T
150
R
26
UniProt
VAR_062608
S
156
R
SHH_HUMAN
Disease (HPE3)
---
H
S
156
R
27
UniProt
VAR_062609
F
170
C
SHH_HUMAN
Disease (HPE3)
---
H
F
170
C
28
UniProt
VAR_062610
D
171
H
SHH_HUMAN
Disease (HPE3)
---
H
D
171
H
29
UniProt
VAR_039892
C
183
F
SHH_HUMAN
Disease (HPE3)
---
H
C
183
F
30
UniProt
VAR_062611
C
183
R
SHH_HUMAN
Disease (HPE3)
---
H
C
183
R
31
UniProt
VAR_062612
C
183
Y
SHH_HUMAN
Disease (HPE3)
---
H
C
183
Y
32
UniProt
VAR_062613
S
184
L
SHH_HUMAN
Disease (HPE3)
---
H
S
184
L
33
UniProt
VAR_009166
E
188
Q
SHH_HUMAN
Disease (HPE3)
---
H
E
188
Q
34
UniProt
VAR_021518
V
341
I
HHIP_HUMAN
Polymorphism
---
B
V
341
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: EGF_1 (B:655-666)
2: EGF_2 (B:655-666)
3: EGF_3 (B:635-667)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_1
PS00022
EGF-like domain signature 1.
HHIP_HUMAN
623-634
655-666
2
-
B:623-634
-
B:655-666
2
EGF_2
PS01186
EGF-like domain signature 2.
HHIP_HUMAN
623-634
655-666
2
-
B:623-634
-
B:655-666
3
EGF_3
PS50026
EGF-like domain profile.
HHIP_HUMAN
635-667
1
-
B:635-667
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3ho5h_ (H:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Hedgehog/DD-peptidase
(29)
Superfamily
:
Hedgehog/DD-peptidase
(29)
Family
:
Hedgehog (development protein), N-terminal signaling domain
(23)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3ho5h_
H:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3ho5H00 (H:38-191)
View:
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Label:
Classes
(
)
(
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Architectures
(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Muramoyl-pentapeptide Carboxypeptidase; domain 2
(24)
Homologous Superfamily
:
[code=3.30.1380.10, no name defined]
(13)
Human (Homo sapiens)
(4)
1a
3ho5H00
H:38-191
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
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Hetero
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Chain H
Asymmetric Unit 1
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