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3HMV
Biol. Unit 1
Info
Asym.Unit (253 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (126 KB)
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(1)
Title
:
CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B IN COMPLEX WITH A TETRAHYDROBENZOTHIOPHENE INHIBITOR
Authors
:
D. O. Somers, M. Neu
Date
:
29 May 09 (Deposition) - 09 Jun 10 (Release) - 09 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.23
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pde, Phosphodiesterase, Camp, Alternative Splicing, Hydrolase, Phosphoprotein, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Kranz, M. Wall, B. Evans, A. Miah, S. Ballantine, C. Delves, B. Dombroski, J. Gross, J. Schneck, J. P. Villa, M. Neu, D. O. Somers
Identification Of Pde4B Over 4D Subtype-Selective Inhibitors Revealing An Unprecedented Binding Mode
Bioorg. Med. Chem. V. 17 5336 2009
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: (6S)-6-METHYL-2-{[(2-NITROPHENYL)C... (HBTa)
2b: (6S)-6-METHYL-2-{[(2-NITROPHENYL)C... (HBTb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
HBT
1
Ligand/Ion
(6S)-6-METHYL-2-{[(2-NITROPHENYL)CARBONYL]AMINO}-4,5,6,7-TETRAHYDRO-1-BENZOTHIOPHENE-3-CARBOXAMIDE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:12 , HOH A:14 , HIS A:238 , HIS A:274 , ASP A:275 , ASP A:392
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
HOH A:9 , HOH A:10 , HOH A:13 , HOH A:14 , HOH A:15 , ASP A:275
BINDING SITE FOR RESIDUE MG A 529
3
AC3
SOFTWARE
HOH A:23 , HOH A:73 , MET A:347 , ASP A:392 , LEU A:393 , ASN A:395 , TYR A:403 , ILE A:410 , GLN A:443 , PHE A:446 , PHE A:506 , HOH A:532
BINDING SITE FOR RESIDUE HBT A 530
4
AC4
SOFTWARE
LEU A:295 , ASN A:298 , HOH B:124 , TYR B:449 , PRO B:453
BINDING SITE FOR RESIDUE GOL A 531
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDEASE_I (A:274-285)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDEASE_I
PS00126
3'5'-cyclic nucleotide phosphodiesterases signature.
PDE4B_HUMAN
446-457
1
A:274-285
-
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Exons
(0, 0)
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3hmva_ (A:)
1b: SCOP_d3hmvb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
HD-domain/PDEase-like
(204)
Superfamily
:
HD-domain/PDEase-like
(204)
Family
:
PDEase
(118)
Protein domain
:
Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b
(28)
Human (Homo sapiens) [TaxId: 9606]
(28)
1a
d3hmva_
A:
1b
d3hmvb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (253 KB)
Header - Asym.Unit
Biol.Unit 1 (125 KB)
Header - Biol.Unit 1
Biol.Unit 2 (126 KB)
Header - Biol.Unit 2
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