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3HKW
Biol. Unit 1
Info
Asym.Unit (616 KB)
Biol.Unit 1 (209 KB)
Biol.Unit 2 (208 KB)
Biol.Unit 3 (204 KB)
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(1)
Title
:
HCV NS5B GENOTYPE 1A IN COMPLEX WITH 1,5 BENZODIAZEPINE INHIBITOR 6
Authors
:
O. Nyanguile, H. L. De Bondt
Date
:
26 May 09 (Deposition) - 26 May 10 (Release) - 26 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Hcv Polymerase, Subtype 1A, 1, 5-Benzodiazepine, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Nyanguile, B. Devogelaere, L. Vijgen, W. Van Den Broeck, F. Pauwels, M. D. Cummings, H. L. De Bondt, A. M. Vos, J. M. Berke, O. Lenz, G. Vandercruyssen, K. Vermeiren, W. Mostmans, P. Dehertogh, F. Delouvroy, S. Vendeville, K. Vandyck, K. Dockx, E. Cleiren, P. Raboisson, K. A. Simmen, G. C. Fanning
1A/1B Subtype Profiling Of Nonnucleoside Polymerase Inhibitors Of Hepatitis C Virus
J. Virol. V. 84 2923 2010
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: (11S)-10-[(2,5-DIMETHYL-1,3-OXAZOL... (IX6a)
2b: (11S)-10-[(2,5-DIMETHYL-1,3-OXAZOL... (IX6b)
2c: (11S)-10-[(2,5-DIMETHYL-1,3-OXAZOL... (IX6c)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
IX6
1
Ligand/Ion
(11S)-10-[(2,5-DIMETHYL-1,3-OXAZOL-4-YL)CARBONYL]-11-{2-FLUORO-4-[(2-METHYLPROP-2-EN-1-YL)OXY]PHENYL}-3,3-DIMETHYL-2,3,4,5,10,11-HEXAHYDROTHIOPYRANO[3,2-B][1,5]BENZODIAZEPIN-6-OL 1,1-DIOXIDE
3
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC6 (SOFTWARE)
13: CC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:193 , CYS A:366 , SER A:367 , ARG A:386 , ASN A:411 , MET A:414 , PHE A:415 , GLU A:446 , ILE A:447 , TYR A:448 , GLY A:449 , SER A:556 , HOH A:821 , HOH A:880
BINDING SITE FOR RESIDUE IX6 A 579
02
AC2
SOFTWARE
ASN A:24 , ARG A:436 , HOH A:801 , HOH A:1164 , HOH A:1170 , LYS C:209 , ARG C:380 , TYR C:382 , HOH C:1409
BINDING SITE FOR RESIDUE SO4 A 580
03
AC3
SOFTWARE
LYS A:209 , ARG A:380 , TYR A:382 , HOH A:605 , HOH A:890 , ASN B:24 , ARG B:436 , HOH B:672
BINDING SITE FOR RESIDUE SO4 A 581
04
AC4
SOFTWARE
ARG A:32 , HIS A:33 , GLU A:237 , GLN A:241 , LYS A:254 , HOH A:726 , HOH A:955 , HOH A:1554
BINDING SITE FOR RESIDUE SO4 A 582
05
AC5
SOFTWARE
ARG A:505 , ARG A:531 , THR A:532 , HOH A:640
BINDING SITE FOR RESIDUE SO4 A 583
06
AC6
SOFTWARE
GLU A:440 , GLY A:516 , ARG A:517 , HOH A:924 , HOH A:1515
BINDING SITE FOR RESIDUE SO4 A 584
07
AC7
SOFTWARE
ARG A:48 , LYS A:51 , ARG A:222 , CYS A:223 , HOH A:947
BINDING SITE FOR RESIDUE SO4 A 585
08
AC8
SOFTWARE
ASN A:28 , ARG A:32 , HIS A:34 , VAL A:251 , HOH A:609 , HOH A:661 , HOH A:727 , HOH A:1159
BINDING SITE FOR RESIDUE GOL A 586
09
AC9
SOFTWARE
SER A:29 , ASP A:244 , ARG A:250 , PRO A:495 , ARG A:503 , HOH A:779 , HOH A:836 , HOH A:1119
BINDING SITE FOR RESIDUE GOL A 587
10
BC1
SOFTWARE
HIS A:475 , SER A:476 , HOH A:845
BINDING SITE FOR RESIDUE SO4 A 588
11
BC2
SOFTWARE
GLN A:58 , LEU A:60 , SER A:231 , HOH A:883 , HOH A:891
BINDING SITE FOR RESIDUE GOL A 589
12
BC6
SOFTWARE
HIS A:374 , ARG A:380 , HIS B:402 , GLN B:438 , GOL B:585 , HOH B:738
BINDING SITE FOR RESIDUE SO4 B 582
13
CC7
SOFTWARE
HIS A:402 , GLN A:438 , HOH A:838 , HOH A:892 , HOH A:979 , HOH A:1125 , HIS C:374 , ARG C:380
BINDING SITE FOR RESIDUE SO4 C 582
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RDRP_SSRNA_POS (A:214-332)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RDRP_SSRNA_POS
PS50507
RdRp of positive ssRNA viruses catalytic domain profile.
POLG_HCV1
2634-2752
1
A:214-332
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3hkwa_ (A:)
1b: SCOP_d3hkwb_ (B:)
1c: SCOP_d3hkwc_ (C:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Hepatitis c virus subtype 1a [TaxId: 31646]
(1)
1a
d3hkwa_
A:
1b
d3hkwb_
B:
1c
d3hkwc_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (616 KB)
Header - Asym.Unit
Biol.Unit 1 (209 KB)
Header - Biol.Unit 1
Biol.Unit 2 (208 KB)
Header - Biol.Unit 2
Biol.Unit 3 (204 KB)
Header - Biol.Unit 3
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