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3HKK
Asym. Unit
Info
Asym.Unit (33 KB)
Biol.Unit 1 (78 KB)
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(1)
Title
:
STRUCTURE OF HUMAN LEUKOTRIENE C4 SYNTHASE IN COMPLEX WITH GLUTATHIONE SULFONATE
Authors
:
A. Rinaldo-Matthis, J. Z. Haeggstrom
Date
:
24 May 09 (Deposition) - 26 May 10 (Release) - 26 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Leukotriene C4 Synthase, Leukotriene Biosynthesis, Lyase, Membrane, Nucleus, Polymorphism, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Rinaldo-Matthis, A. Wetterholm, J. Holm, E. Ohlsson, G. Tibbelin, R. Morgenstern, J. Z. Haeggstrom
Pre-Steady State Kinetics Of Human Leukotriene C4 Synthase
To Be Published
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: GLUTATHIONE SULFONIC ACID (GTSa)
2a: PALMITOLEIC ACID (PAMa)
3a: PALMITIC ACID (PLMa)
3b: PALMITIC ACID (PLMb)
3c: PALMITIC ACID (PLMc)
3d: PALMITIC ACID (PLMd)
3e: PALMITIC ACID (PLMe)
3f: PALMITIC ACID (PLMf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GTS
1
Ligand/Ion
GLUTATHIONE SULFONIC ACID
2
PAM
1
Ligand/Ion
PALMITOLEIC ACID
3
PLM
6
Ligand/Ion
PALMITIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:4 , TRP A:68 , ILE A:72
BINDING SITE FOR RESIDUE PAM A 1151
2
AC2
SOFTWARE
ARG A:136
BINDING SITE FOR RESIDUE PLM A 1152
3
AC3
SOFTWARE
PHE A:130
BINDING SITE FOR RESIDUE PLM A 1153
4
AC4
SOFTWARE
GLN A:95
BINDING SITE FOR RESIDUE PLM A 1154
5
AC5
SOFTWARE
ILE A:27 , ARG A:30 , PRO A:37 , TYR A:50 , ARG A:51 , GLN A:53 , ASN A:55 , GLU A:58 , TYR A:59 , TYR A:93 , TYR A:97 , ARG A:104 , LEU A:108
BINDING SITE FOR RESIDUE GTS A 203
6
AC6
SOFTWARE
ILE A:27 , TYR A:59 , TYR A:109
BINDING SITE FOR RESIDUE PLM A 151
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042736 (R142Q, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042736
R
142
Q
LTC4S_HUMAN
Polymorphism
11541078
A
R
142
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FLAP_GST2_LTC4S (A:42-56)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FLAP_GST2_LTC4S
PS01297
FLAP/GST2/LTC4S family signature.
LTC4S_HUMAN
42-56
1
A:42-56
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Exons
(5, 5)
Info
All Exons
Exon 1.1c (A:1-20)
Exon 1.3b (A:20-53)
Exon 1.3f (A:53-77)
Exon 1.3g (A:77-104)
Exon 1.4e (A:104-145)
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All Exon Boundaries
1: Boundary -/1.1c
2: Boundary 1.1c/1.3b
3: Boundary 1.3b/1.3f
4: Boundary 1.3f/1.3g
5: Boundary 1.3g/1.4e
6: Boundary 1.4e/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000292596
1c
ENSE00001194180
chr5:
179220987-179221139
153
LTC4S_HUMAN
1-20
20
1
A:1-20
20
1.3b
ENST00000292596
3b
ENSE00001056000
chr5:
179222585-179222684
100
LTC4S_HUMAN
20-53
34
1
A:20-53
34
1.3f
ENST00000292596
3f
ENSE00001255861
chr5:
179222787-179222857
71
LTC4S_HUMAN
53-77
25
1
A:53-77
25
1.3g
ENST00000292596
3g
ENSE00001056001
chr5:
179222942-179223023
82
LTC4S_HUMAN
77-104
28
1
A:77-104
28
1.4e
ENST00000292596
4e
ENSE00002050377
chr5:
179223254-179223513
260
LTC4S_HUMAN
104-150
47
1
A:104-145
42
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3hkkA00 (A:1-145)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
MAPEG domain-like
(7)
Human (Homo sapiens)
(6)
1a
3hkkA00
A:1-145
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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