PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3HKE
Asym. Unit
Info
Asym.Unit (290 KB)
Biol.Unit 1 (279 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
TUBULIN-T138067: RB3 STATHMIN-LIKE DOMAIN COMPLEX
Authors
:
A. Dorleans, B. Gigant, R. B. G. Ravelli, P. Mailliet, V. Mikol, M. Knoss
Date
:
23 May 09 (Deposition) - 01 Sep 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Alpha-Tubulin, Beta-Tubulin, Colchicine Domain, Covalent Binding, Gtpase, Microtubule, Stathmin, Tubulin, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Dorleans, B. Gigant, R. B. G. Ravelli, P. Mailliet, V. Mikol, M. Knossow
Variations In The Colchicine-Binding Domain Provide Insight Into The Structural Switch Of Tubulin
Proc. Natl. Acad. Sci. Usa V. 106 13775 2009
[
close entry info
]
Hetero Components
(4, 11)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
4a: 2,3,4,5,6-PENTAFLUORO-N-(3-FLUORO-... (T13a)
4b: 2,3,4,5,6-PENTAFLUORO-N-(3-FLUORO-... (T13b)
4c: 2,3,4,5,6-PENTAFLUORO-N-(3-FLUORO-... (T13c)
4d: 2,3,4,5,6-PENTAFLUORO-N-(3-FLUORO-... (T13d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MG
3
Ligand/Ion
MAGNESIUM ION
4
T13
4
Ligand/Ion
2,3,4,5,6-PENTAFLUORO-N-(3-FLUORO-4-METHOXYPHENYL)BENZENESULFONAMIDE
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , ILE A:16 , ASP A:69 , GLU A:71 , ASP A:98 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , PRO A:173 , VAL A:177 , SER A:178 , THR A:179 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , MG A:601
BINDING SITE FOR RESIDUE GTP A 600
02
AC2
SOFTWARE
ALA A:99 , ASN A:101 , GLY A:144 , THR A:145 , GTP A:600
BINDING SITE FOR RESIDUE MG A 601
03
AC3
SOFTWARE
CYS B:241 , PRO B:245 , GLN B:247 , LEU B:248 , VAL B:355 , T13 B:700
BINDING SITE FOR RESIDUE T13 B 1241
04
AC4
SOFTWARE
GLN B:11 , CYS B:12 , ALA B:99 , ASN B:101 , SER B:140 , GLY B:142 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , PRO B:173 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:601
BINDING SITE FOR RESIDUE GDP B 600
05
AC5
SOFTWARE
ASN B:101 , GDP B:600
BINDING SITE FOR RESIDUE MG B 601
06
AC6
SOFTWARE
THR A:179 , VAL A:181 , CYS B:241 , LYS B:254 , LEU B:255 , ASN B:258 , VAL B:315 , LYS B:352 , ALA B:354 , T13 B:1241
BINDING SITE FOR RESIDUE T13 B 700
07
AC7
SOFTWARE
GLN C:11 , ALA C:12 , ILE C:16 , ASP C:69 , GLU C:71 , ASP C:98 , SER C:140 , GLY C:142 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , ILE C:171 , PRO C:173 , VAL C:177 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , MG C:601 , LYS D:254
BINDING SITE FOR RESIDUE GTP C 600
08
AC8
SOFTWARE
ALA C:99 , ASN C:101 , GLY C:144 , THR C:145 , GTP C:600
BINDING SITE FOR RESIDUE MG C 601
09
AC9
SOFTWARE
CYS D:241 , PRO D:245 , GLN D:247 , ALA D:354 , VAL D:355 , CYS D:356 , T13 D:700
BINDING SITE FOR RESIDUE T13 D 1241
10
BC1
SOFTWARE
GLN D:11 , CYS D:12 , ALA D:99 , ASN D:101 , SER D:140 , GLY D:142 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , PRO D:173 , VAL D:177 , ASP D:179 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228
BINDING SITE FOR RESIDUE GDP D 600
11
BC2
SOFTWARE
THR C:179 , VAL C:181 , ALA D:250 , LEU D:255 , ASN D:258 , MET D:259 , VAL D:318 , LYS D:352 , ALA D:354 , T13 D:1241
BINDING SITE FOR RESIDUE T13 D 700
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: STATHMIN_3 (E:5-141)
2: STATHMIN_1 (E:45-49)
3: STATHMIN_2 (E:73-82)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
STATHMIN_3
PS51663
Stathmin-like (SLD) domain profile.
STMN4_RAT
48-189
1
E:5-141
2
STATHMIN_1
PS00563
Stathmin family signature 1.
STMN4_RAT
84-93
1
E:45-49
3
STATHMIN_2
PS01041
Stathmin family signature 2.
STMN4_RAT
117-126
1
E:73-82
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (290 KB)
Header - Asym.Unit
Biol.Unit 1 (279 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3HKE
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help