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3HJV
Asym. Unit
Info
Asym.Unit (130 KB)
Biol.Unit 1 (122 KB)
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(1)
Title
:
1.7 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF AN ACYL CARRIER PROTEIN S-MALONYLTRANSFERASE FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961
Authors
:
A. S. Halavaty, Z. Wawrzak, S. Anderson, T. Skarina, O. Onopriyenko, K. A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
22 May 09 (Deposition) - 09 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Acyl Carrier Protein S-Malonyltransferase, Structural Genomics, Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Halavaty, Z. Wawrzak, S. Anderson, T. Skarina, O. Onopriyenko, K. Kwon, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 7 Angstrom Resolution Crystal Structure Of An Acyl Carrie Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
To Be Published
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Hetero Components
(5, 47)
Info
All Hetero Components
1a: BUTYL ACETATE (8JZa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
3a: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID (CXSa)
3b: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID (CXSb)
3c: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID (CXSc)
3d: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID (CXSd)
3e: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID (CXSe)
3f: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID (CXSf)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
8JZ
1
Ligand/Ion
BUTYL ACETATE
2
CL
9
Ligand/Ion
CHLORIDE ION
3
CXS
6
Ligand/Ion
3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
4
MSE
13
Mod. Amino Acid
SELENOMETHIONINE
5
SO4
18
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:195 , CXS A:325 , ASP B:60 , ARG B:66
BINDING SITE FOR RESIDUE SO4 A 313
02
AC2
SOFTWARE
HOH A:619 , TYR B:47 , ARG B:66 , LYS B:194 , HOH B:473
BINDING SITE FOR RESIDUE SO4 B 313
03
AC3
SOFTWARE
TYR A:47 , ASP A:48 , CXS A:325 , HOH A:440 , HOH A:713
BINDING SITE FOR RESIDUE SO4 A 314
04
AC4
SOFTWARE
GLY A:142 , GLY A:170 , LYS A:194 , HOH A:635 , HOH A:636 , HOH A:651
BINDING SITE FOR RESIDUE SO4 A 315
05
AC5
SOFTWARE
ARG A:195 , HOH A:650 , HOH A:651 , HOH A:652 , PRO B:57 , HOH B:649
BINDING SITE FOR RESIDUE SO4 A 316
06
AC6
SOFTWARE
CXS A:325 , ILE B:141 , LYS B:194 , ARG B:195 , HOH B:399
BINDING SITE FOR RESIDUE SO4 B 314
07
AC7
SOFTWARE
LYS B:113 , VAL B:294 , LYS B:295 , THR B:296 , HOH B:471 , HOH B:660 , HOH B:674 , HOH B:740
BINDING SITE FOR RESIDUE SO4 B 315
08
AC8
SOFTWARE
LYS A:189 , LYS A:194 , ARG A:195 , ALA A:196 , LEU A:197 , SO4 A:321 , SO4 A:322
BINDING SITE FOR RESIDUE SO4 A 317
09
AC9
SOFTWARE
PHE A:226 , ASN A:227 , ALA A:228 , PRO A:245 , HOH A:738 , ARG B:261 , HOH B:486 , HOH B:744
BINDING SITE FOR RESIDUE SO4 A 318
10
BC1
SOFTWARE
VAL B:76 , ARG B:80 , VAL B:105 , HOH B:365 , HOH B:701
BINDING SITE FOR RESIDUE SO4 B 316
11
BC2
SOFTWARE
GLY A:22 , MSE A:23 , LEU A:24 , ALA A:25 , ASP A:26 , HOH A:416 , HOH A:450 , HOH A:655 , LYS B:284
BINDING SITE FOR RESIDUE SO4 A 319
12
BC3
SOFTWARE
PRO A:131 , GLU A:182 , ARG A:183 , VAL A:186 , HOH A:334 , HOH A:437 , HOH A:590 , HOH A:616 , HOH A:754
BINDING SITE FOR RESIDUE SO4 A 320
13
BC4
SOFTWARE
GLY B:22 , MSE B:23 , LEU B:24 , ALA B:25 , ASP B:26 , HOH B:359 , HOH B:381 , HOH B:597
BINDING SITE FOR RESIDUE SO4 B 317
14
BC5
SOFTWARE
GLY B:142 , LEU B:143 , GLU B:144 , GLY B:170 , HOH B:626
BINDING SITE FOR RESIDUE SO4 B 318
15
BC6
SOFTWARE
TYR A:138 , GLY A:185 , VAL A:186 , LYS A:189 , ALA A:196 , SO4 A:317 , HOH A:432 , HOH A:489
BINDING SITE FOR RESIDUE SO4 A 321
16
BC7
SOFTWARE
ARG A:195 , LEU A:197 , SO4 A:317 , HOH A:484 , HOH A:619 , PHE B:65 , ARG B:66
BINDING SITE FOR RESIDUE SO4 A 322
17
BC8
SOFTWARE
LYS B:189 , LYS B:194 , ARG B:195 , ALA B:196 , HOH B:623 , HOH B:692
BINDING SITE FOR RESIDUE SO4 B 319
18
BC9
SOFTWARE
TYR A:31 , ALA A:32 , GLN A:84 , LYS A:284 , VAL A:300 , ALA A:301 , HOH A:409 , HOH A:442 , HOH A:523 , HOH A:582
BINDING SITE FOR RESIDUE SO4 A 323
19
CC1
SOFTWARE
HIS A:96 , MSE A:137 , ASN A:165 , ASN A:167 , SER A:205 , HIS A:206 , VAL A:285 , CL A:330 , HOH A:385 , HOH A:394 , HOH A:633 , VAL B:58 , GLU B:59
BINDING SITE FOR RESIDUE CXS A 324
20
CC2
SOFTWARE
SER B:270 , ALA B:271 , GLY B:273 , HOH B:761 , HOH B:770
BINDING SITE FOR RESIDUE CXS B 320
21
CC3
SOFTWARE
VAL A:58 , GLU A:59 , HOH A:767 , GLN B:16 , HIS B:96 , SER B:97 , MSE B:137 , ASN B:165 , HIS B:206 , HOH B:464 , HOH B:480 , HOH B:483 , HOH B:523 , HOH B:629 , HOH B:630
BINDING SITE FOR RESIDUE CXS B 321
22
CC4
SOFTWARE
ASP A:60 , ARG A:66 , LYS A:194 , ARG A:195 , SO4 A:313 , SO4 A:314 , HOH A:498 , SO4 B:314
BINDING SITE FOR RESIDUE CXS A 325
23
CC5
SOFTWARE
THR A:134 , VAL A:186 , GLU A:190 , ALA A:208 , LEU A:209 , LYS A:211 , PRO A:212 , HOH A:403 , HOH A:406 , HOH A:503 , HOH A:706 , HOH A:728 , HOH A:747
BINDING SITE FOR RESIDUE CXS A 326
24
CC6
SOFTWARE
SER A:270 , ALA A:271 , GLY A:273 , HOH A:502 , HOH A:561 , HOH B:545
BINDING SITE FOR RESIDUE CXS A 327
25
CC7
SOFTWARE
GLN B:16 , GLN B:19 , HOH B:464
BINDING SITE FOR RESIDUE CL B 322
26
CC8
SOFTWARE
GLN A:16 , GLN A:19 , HOH A:611 , HOH B:457 , HOH B:482
BINDING SITE FOR RESIDUE CL A 328
27
CC9
SOFTWARE
ASN B:62 , HOH B:503
BINDING SITE FOR RESIDUE CL B 323
28
DC1
SOFTWARE
LYS A:35 , TRP A:50 , HOH A:501
BINDING SITE FOR RESIDUE CL A 329
29
DC2
SOFTWARE
SER B:97 , ARG B:122 , HOH B:328 , HOH B:352 , HOH B:523
BINDING SITE FOR RESIDUE CL B 324
30
DC3
SOFTWARE
LYS B:284 , VAL B:300 , ALA B:301 , HOH B:354 , HOH B:675
BINDING SITE FOR RESIDUE CL B 325
31
DC4
SOFTWARE
CXS A:324
BINDING SITE FOR RESIDUE CL A 330
32
DC5
SOFTWARE
GLN A:16 , SER A:97 , ARG A:122 , HOH A:363 , HOH A:385
BINDING SITE FOR RESIDUE CL A 331
33
DC6
SOFTWARE
PHE A:65 , ARG A:66 , HOH A:534 , ARG B:195 , HOH B:752
BINDING SITE FOR RESIDUE CL A 332
34
DC7
SOFTWARE
GLY A:86 , GLU A:88 , GLN A:89 , HOH A:554 , LYS B:35 , GLN B:36 , ALA B:39
BINDING SITE FOR RESIDUE 8JZ A 333
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Label:
Sorry, no Info available
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3hjvA02 (A:130-202)
1b: CATH_3hjvB02 (B:130-202)
2a: CATH_3hjvA01 (A:7-129,A:203-312)
2b: CATH_3hjvB01 (B:7-129,B:203-312)
View:
Select:
Label:
Classes
(
)
(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.250, no name defined]
(15)
Vibrio cholerae. Organism_taxid: 666. Strain: vibrio cholerae o1 biovar eltor str. N16961.
(1)
1a
3hjvA02
A:130-202
1b
3hjvB02
B:130-202
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
(15)
Homologous Superfamily
:
Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
(15)
Vibrio cholerae. Organism_taxid: 666. Strain: vibrio cholerae o1 biovar eltor str. N16961.
(1)
2a
3hjvA01
A:7-129,A:203-312
2b
3hjvB01
B:7-129,B:203-312
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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