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3HJM
Biol. Unit 1
Info
Asym.Unit (151 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GLUTATHIONE TRANSFERASE PI Y108V MUTANT
Authors
:
L. J. Parker
Date
:
22 May 09 (Deposition) - 22 Sep 09 (Release) - 05 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase, Glutathione, Detoxification, Mutant, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Quesada-Soriano, L. J. Parker, A. Primavera, J. M. Casas-Solvas, A. Vargas-Berenguel, C. Baron, C. J. Morton, A. P. Mazzetti, M. Lo Bello, M. W. Parker, L. Garcia-Fuentes
Influence Of The H-Site Residue 108 On Human Glutathione Transferase P1-1 Ligand Binding: Structure-Thermodynamic Relationships And Thermal Stability.
Protein Sci. V. 18 2454 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
3c: CARBONATE ION (CO3c)
3d: CARBONATE ION (CO3d)
3e: CARBONATE ION (CO3e)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
4c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
5a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
CO3
3
Ligand/Ion
CARBONATE ION
4
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5
PO4
-1
Ligand/Ion
PHOSPHATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:22 , TRP A:28 , GLU A:197 , HOH A:247
BINDING SITE FOR RESIDUE MES A 210
2
AC2
SOFTWARE
GLY A:77 , GLN A:147 , HOH A:219 , HOH A:376 , HOH A:547
BINDING SITE FOR RESIDUE CA A 211
3
AC3
SOFTWARE
ARG A:13 , GLN A:51 , PRO A:53 , GLN A:64 , SER A:65 , HOH A:276 , HOH A:450 , HOH A:549
BINDING SITE FOR RESIDUE CO3 A 212
4
AC4
SOFTWARE
ASP A:98 , GLN B:64 , HOH B:241
BINDING SITE FOR RESIDUE CL A 213
5
AC5
SOFTWARE
TRP B:28 , GLU B:30 , PHE B:192 , GLU B:197 , HOH B:282
BINDING SITE FOR RESIDUE MES B 210
6
AC6
SOFTWARE
GLY B:77 , GLN B:147 , HOH B:288 , HOH B:289 , HOH B:290 , HOH B:291 , HOH B:314
BINDING SITE FOR RESIDUE CA B 211
7
AC7
SOFTWARE
ARG B:13 , PRO B:53 , GLN B:64 , SER B:65 , HOH B:235 , HOH B:241 , HOH B:245
BINDING SITE FOR RESIDUE CO3 B 212
8
AC8
SOFTWARE
GLN A:64 , HOH A:549 , ASP B:98 , HOH B:584
BINDING SITE FOR RESIDUE CL B 213
9
AC9
SOFTWARE
GLN B:147 , ILE B:148 , ARG B:186 , HOH B:371
BINDING SITE FOR RESIDUE CO3 B 214
[
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]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014499 (I104V, chain A/B, )
2: VAR_014500 (A113V, chain A/B, )
3: VAR_049493 (G168D, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014499
I
105
V
GSTP1_HUMAN
Polymorphism
1695
A/B
I
104
V
2
UniProt
VAR_014500
A
114
V
GSTP1_HUMAN
Polymorphism
1138272
A/B
A
113
V
3
UniProt
VAR_049493
G
169
D
GSTP1_HUMAN
Polymorphism
41462048
A/B
G
168
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GST_CTER (A:82-203,B:82-203)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTP1_HUMAN
83-204
2
A:82-203
B:82-203
-
-
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3hjma2 (A:79-209)
1b: SCOP_d3hjmb2 (B:79-209)
1c: SCOP_d3hjmc2 (C:79-209)
1d: SCOP_d3hjmd2 (D:79-209)
2a: SCOP_d3hjma1 (A:2-78)
2b: SCOP_d3hjmb1 (B:2-78)
2c: SCOP_d3hjmc1 (C:2-78)
2d: SCOP_d3hjmd1 (D:2-78)
View:
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Classes
(
)
(
)
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(
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(
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class pi GST
(65)
Human (Homo sapiens) [TaxId: 9606]
(52)
1a
d3hjma2
A:79-209
1b
d3hjmb2
B:79-209
1c
d3hjmc2
C:79-209
1d
d3hjmd2
D:79-209
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class pi GST
(61)
Human (Homo sapiens) [TaxId: 9606]
(49)
2a
d3hjma1
A:2-78
2b
d3hjmb1
B:2-78
2c
d3hjmc1
C:2-78
2d
d3hjmd1
D:2-78
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3hjmA01 (A:2-78,A:187-208)
1b: CATH_3hjmB01 (B:2-78,B:187-208)
1c: CATH_3hjmC01 (C:2-78,C:187-208)
1d: CATH_3hjmD01 (D:2-78,D:187-208)
2a: CATH_3hjmA02 (A:79-186)
2b: CATH_3hjmB02 (B:79-186)
2c: CATH_3hjmC02 (C:79-186)
2d: CATH_3hjmD02 (D:79-186)
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)
Architectures
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
3hjmA01
A:2-78,A:187-208
1b
3hjmB01
B:2-78,B:187-208
1c
3hjmC01
C:2-78,C:187-208
1d
3hjmD01
D:2-78,D:187-208
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
3hjmA02
A:79-186
2b
3hjmB02
B:79-186
2c
3hjmC02
C:79-186
2d
3hjmD02
D:79-186
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (151 KB)
Header - Asym.Unit
Biol.Unit 1 (74 KB)
Header - Biol.Unit 1
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