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3HIH
Biol. Unit 1
Info
Asym.Unit (85 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (40 KB)
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(1)
Title
:
STRUCTURE OF HUMAN PLK1-PBD WITH GLYCEROL AND SULFATE IN THE PHOPHOPEPTIDE BINDING SITE
Authors
:
A. Wlodawer, T. Moulaei
Date
:
20 May 09 (Deposition) - 09 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Kinase, Phosphopeptide-Binding Domain, Transferase, Serine Threonine Protein Kinase, Atp-Binding, Cell Cycle, Cell Division, Mitosis, Nucleotide-Binding, Nucleus, Phosphoprotein, Serine/Threonine- Protein Kinase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. M. Yun, T. Moulaei, D. Lim, J. K. Bang, J. E. Park, S. R. Shenoy, F. Liu, Y. H. Kang, C. Liao, N. K. Soung, S. Lee, D. Y. Yoon, Y. Lim, D. H. Lee, A. Otaka, E. Appella, J. B. Mcmahon, M. C. Nicklaus, T. R. Burke, M. B. Yaffe, A. Wlodawer, K. S. Lee
Structural And Functional Analyses Of Minimal Phosphopeptides Targeting The Polo-Box Domain Of Polo-Like Kinase 1.
Nat. Struct. Mol. Biol. V. 16 876 2009
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
4
Ligand/Ion
GLYCEROL
3
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GOL A:6 , HOH A:58 , HOH A:80 , GLU A:460 , ARG A:507 , HIS A:538 , LYS A:540
BINDING SITE FOR RESIDUE SO4 A 1
2
AC2
SOFTWARE
GOL A:8 , TYR A:445 , TYR A:462 , ARG A:507 , LEU A:508 , ARG A:557
BINDING SITE FOR RESIDUE SO4 A 2
3
AC3
SOFTWARE
THR A:517 , ARG A:518 , SER A:519 , TYR A:582
BINDING SITE FOR RESIDUE SO4 A 3
4
AC4
SOFTWARE
SO4 A:1 , HOH A:15 , HOH A:58 , HOH A:80 , HOH A:110 , LYS A:413 , TRP A:414 , THR A:459 , GLU A:460 , LEU A:490
BINDING SITE FOR RESIDUE GOL A 6
5
AC5
SOFTWARE
HOH A:116 , HOH A:186 , PHE A:436 , ASN A:437 , ASP A:438 , LEU A:478
BINDING SITE FOR RESIDUE GOL A 7
6
AC6
SOFTWARE
SO4 A:2 , HOH A:31 , TYR A:462
BINDING SITE FOR RESIDUE GOL A 8
7
AC7
SOFTWARE
HOH A:4 , ASN A:430 , LEU A:444 , ARG A:483 , HOH A:598
BINDING SITE FOR RESIDUE GOL A 10
8
AC8
SOFTWARE
HOH A:82 , HOH A:315 , TRP A:514
BINDING SITE FOR RESIDUE EDO A 12
9
AC9
SOFTWARE
GLU A:501 , GLY A:502 , HOH B:158 , HIS B:382 , ASN B:385 , ARG B:584
BINDING SITE FOR RESIDUE SO4 B 4
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_041021 (L463H, chain A, )
2: VAR_041022 (R518H, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041021
L
463
H
PLK1_HUMAN
Polymorphism
45569335
A
L
463
H
2
UniProt
VAR_041022
R
518
H
PLK1_HUMAN
Polymorphism
56027600
A
R
518
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: POLO_BOX (A:417-480,A:515-584)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
POLO_BOX
PS50078
POLO box domain profile.
PLK1_HUMAN
417-480
515-584
2
A:417-480
-
A:515-584
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3hiha1 (A:371-494)
1b: SCOP_d3hiha2 (A:495-593)
1c: SCOP_d3hihb1 (B:371-494)
1d: SCOP_d3hihb2 (B:495-593)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Polo-box domain
(18)
Superfamily
:
Polo-box domain
(18)
Family
:
Polo-box duplicated region
(17)
Protein domain
:
Serine/threonine-protein kinase plk C-terminal domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3hiha1
A:371-494
1b
d3hiha2
A:495-593
1c
d3hihb1
B:371-494
1d
d3hihb2
B:495-593
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3hihA02 (A:412-508)
1b: CATH_3hihA01 (A:371-411,A:509-593)
1c: CATH_3hihB01 (B:371-411,B:509-593)
1d: CATH_3hihB02 (B:412-508)
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)
Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Arylsulfatase, C-terminal domain
(26)
Homologous Superfamily
:
Polo-box like domain
(10)
Human (Homo sapiens)
(10)
1a
3hihA02
A:412-508
1b
3hihA01
A:371-411,A:509-593
1c
3hihB01
B:371-411,B:509-593
1d
3hihB02
B:412-508
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (85 KB)
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