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3HHM
Biol. Unit 1
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Asym.Unit (222 KB)
Biol.Unit 1 (215 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF P110ALPHA H1047R MUTANT IN COMPLEX WITH NISH2 OF P85ALPHA AND THE DRUG WORTMANNIN
Authors
:
L. M. Amzel, B. Vogelstein, S. B. Gabelli, D. Mandelker
Date
:
15 May 09 (Deposition) - 29 Sep 09 (Release) - 20 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
P110, P85, Pi3Kca, Pi3K, Pik3R1, Phosphatidilynositol 3, 4, 5- Triphosphate, Wortmannin, H1047R, Atp-Binding, Disease Mutation, Kinase, Nucleotide-Binding, Oncogene, Polymorphism, Transferase, Transferase/Oncoprotein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Mandelker, S. B. Gabelli, O. Schmidt-Kittler, J. Zhu, I. Cheong, C. H. Huang, K. W. Kinzler, B. Vogelstein, L. M. Amzel
A Frequent Kinase Domain Mutation That Changes The Interaction Between Pi3K{Alpha} And The Membrane.
Proc. Natl. Acad. Sci. Usa V. 106 16996 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: (1S,6BR,9AS,11R,11BR)-9A,11B-DIMET... (KWTa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
KWT
1
Ligand/Ion
(1S,6BR,9AS,11R,11BR)-9A,11B-DIMETHYL-1-[(METHYLOXY)METHYL]-3,6,9-TRIOXO-1,6,6B,7,8,9,9A,10,11,11B-DECAHYDRO-3H-FURO[4,3,2-DE]INDENO[4,5-H][2]BENZOPYRAN-11-YL ACETATE
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:233 , SER A:774 , LYS A:776 , PRO A:778 , TRP A:780 , ILE A:800 , LYS A:802 , TYR A:836 , GLU A:849 , VAL A:850 , VAL A:851 , ILE A:932 , ASP A:933 , HOH A:1102
BINDING SITE FOR RESIDUE KWT A 1833
[
close Site info
]
SAPs(SNPs)/Variants
(48, 48)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_026166 (R38H, chain A, )
02: VAR_042942 (I43V, chain A, )
03: VAR_069251 (E81K, chain A, )
04: VAR_026167 (R88Q, chain A, )
05: VAR_026168 (G106V, chain A, )
06: VAR_069786 (G118D, chain A, )
07: VAR_069787 (E135K, chain A, )
08: VAR_069788 (E218K, chain A, )
09: VAR_010023 (M326I, chain B, )
10: VAR_042943 (S332R, chain A, )
11: VAR_026169 (Y343C, chain A, )
12: VAR_069789 (V356I, chain A, )
13: VAR_069252 (G364R, chain A, )
14: VAR_069253 (E365K, chain A, )
15: VAR_069254 (C378Y, chain A, )
16: VAR_069790 (R382K, chain A, )
17: VAR_026170 (I391M, chain A, )
18: VAR_010024 (R409Q, chain B, )
19: VAR_029562 (E451K, chain B, )
20: VAR_026172 (E453Q, chain A, )
21: VAR_070221 (E489K, chain B, )
22: VAR_026173 (E542K, chain A, )
23: VAR_026174 (E542Q, chain A, )
24: VAR_026175 (E542V, chain A, )
25: VAR_026176 (E545A, chain A, )
26: VAR_026177 (E545G, chain A, )
27: VAR_026178 (E545K, chain A, )
28: VAR_026179 (Q546E, chain A, )
29: VAR_026180 (Q546K, chain A, )
30: VAR_026181 (Q546P, chain A, )
31: VAR_026182 (Q546R, chain A, )
32: VAR_069256 (E726K, chain A, )
33: VAR_069257 (G914R, chain A, )
34: VAR_026183 (G1007R, chain A, )
35: VAR_026184 (Y1021C, chain A, )
36: VAR_026185 (Y1021H, chain A, )
37: VAR_026186 (Y1021N, chain A, )
38: VAR_026187 (R1023Q, chain A, )
39: VAR_069258 (T1025A, chain A, )
40: VAR_026188 (T1025N, chain A, )
41: VAR_026189 (A1035V, chain A, )
42: VAR_026190 (M1043I, chain A, )
43: VAR_026191 (R1047L, chain A, )
44: VAR_026192 (R1047R, chain A, )
45: VAR_026193 (R1047Y, chain A, )
46: VAR_069259 (G1049S, chain A, )
47: VAR_026194 (G1050D, chain A, )
48: VAR_026195 (T1052K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_026166
R
38
H
PK3CA_HUMAN
Disease (CRC)
---
A
R
38
H
02
UniProt
VAR_042942
I
43
V
PK3CA_HUMAN
Polymorphism
1051399
A
I
43
V
03
UniProt
VAR_069251
E
81
K
PK3CA_HUMAN
Disease (MCAP)
---
A
E
81
K
04
UniProt
VAR_026167
R
88
Q
PK3CA_HUMAN
Disease (MCAP)
---
A
R
88
Q
05
UniProt
VAR_026168
G
106
V
PK3CA_HUMAN
Disease (CRC)
---
A
G
106
V
06
UniProt
VAR_069786
G
118
D
PK3CA_HUMAN
Disease (CWS5)
---
A
G
118
D
07
UniProt
VAR_069787
E
135
K
PK3CA_HUMAN
Disease (CWS5)
---
A
E
135
K
08
UniProt
VAR_069788
E
218
K
PK3CA_HUMAN
Disease (CWS5)
---
A
E
218
K
09
UniProt
VAR_010023
M
326
I
P85A_HUMAN
Polymorphism
3730089
B
M
326
I
10
UniProt
VAR_042943
S
332
R
PK3CA_HUMAN
Polymorphism
1051407
A
S
332
R
11
UniProt
VAR_026169
Y
343
C
PK3CA_HUMAN
Unclassified
---
A
Y
343
C
12
UniProt
VAR_069789
V
356
I
PK3CA_HUMAN
Disease (CWS5)
---
A
V
356
I
13
UniProt
VAR_069252
G
364
R
PK3CA_HUMAN
Disease (MCAP)
---
A
G
364
R
14
UniProt
VAR_069253
E
365
K
PK3CA_HUMAN
Disease (MCAP)
---
A
E
365
K
15
UniProt
VAR_069254
C
378
Y
PK3CA_HUMAN
Disease (MCAP)
---
A
C
378
Y
16
UniProt
VAR_069790
R
382
K
PK3CA_HUMAN
Disease (CWS5)
---
A
R
382
K
17
UniProt
VAR_026170
I
391
M
PK3CA_HUMAN
Polymorphism
3729680
A
I
391
M
18
UniProt
VAR_010024
R
409
Q
P85A_HUMAN
Unclassified
---
B
R
409
Q
19
UniProt
VAR_029562
E
451
K
P85A_HUMAN
Polymorphism
17852841
B
E
451
K
20
UniProt
VAR_026172
E
453
Q
PK3CA_HUMAN
Disease (CRC)
---
A
E
453
Q
21
UniProt
VAR_070221
E
489
K
P85A_HUMAN
Disease (SHORTS)
---
B
E
489
K
22
UniProt
VAR_026173
E
542
K
PK3CA_HUMAN
Disease (KERSEB)
---
A
E
542
K
23
UniProt
VAR_026174
E
542
Q
PK3CA_HUMAN
Unclassified
---
A
E
542
Q
24
UniProt
VAR_026175
E
542
V
PK3CA_HUMAN
Unclassified
---
A
E
542
V
25
UniProt
VAR_026176
E
545
A
PK3CA_HUMAN
Disease (HCC)
---
A
E
545
A
26
UniProt
VAR_026177
E
545
G
PK3CA_HUMAN
Disease (KERSEB)
---
A
E
545
G
27
UniProt
VAR_026178
E
545
K
PK3CA_HUMAN
Disease (MCAP)
---
A
E
545
K
28
UniProt
VAR_026179
Q
546
E
PK3CA_HUMAN
Unclassified
---
A
Q
546
E
29
UniProt
VAR_026180
Q
546
K
PK3CA_HUMAN
Unclassified
---
A
Q
546
K
30
UniProt
VAR_026181
Q
546
P
PK3CA_HUMAN
Unclassified
---
A
Q
546
P
31
UniProt
VAR_026182
Q
546
R
PK3CA_HUMAN
Unclassified
---
A
Q
546
R
32
UniProt
VAR_069256
E
726
K
PK3CA_HUMAN
Disease (MCAP)
---
A
E
726
K
33
UniProt
VAR_069257
G
914
R
PK3CA_HUMAN
Disease (MCAP)
---
A
G
914
R
34
UniProt
VAR_026183
G
1007
R
PK3CA_HUMAN
Unclassified
---
A
G
1007
R
35
UniProt
VAR_026184
Y
1021
C
PK3CA_HUMAN
Disease (MCAP)
---
A
Y
1021
C
36
UniProt
VAR_026185
Y
1021
H
PK3CA_HUMAN
Unclassified
---
A
Y
1021
H
37
UniProt
VAR_026186
Y
1021
N
PK3CA_HUMAN
Unclassified
---
A
Y
1021
N
38
UniProt
VAR_026187
R
1023
Q
PK3CA_HUMAN
Unclassified
---
A
R
1023
Q
39
UniProt
VAR_069258
T
1025
A
PK3CA_HUMAN
Disease (MCAP)
---
A
T
1025
A
40
UniProt
VAR_026188
T
1025
N
PK3CA_HUMAN
Unclassified
---
A
T
1025
N
41
UniProt
VAR_026189
A
1035
V
PK3CA_HUMAN
Disease (MCAP)
---
A
A
1035
V
42
UniProt
VAR_026190
M
1043
I
PK3CA_HUMAN
Disease (MCAP)
---
A
M
1043
I
43
UniProt
VAR_026191
H
1047
L
PK3CA_HUMAN
Unclassified
---
A
R
1047
L
44
UniProt
VAR_026192
H
1047
R
PK3CA_HUMAN
Disease (OC)
---
A
R
1047
R
45
UniProt
VAR_026193
H
1047
Y
PK3CA_HUMAN
Disease (MCAP)
---
A
R
1047
Y
46
UniProt
VAR_069259
G
1049
S
PK3CA_HUMAN
Disease (MCAP)
---
A
G
1049
S
47
UniProt
VAR_026194
G
1050
D
PK3CA_HUMAN
Unclassified
---
A
G
1050
D
48
UniProt
VAR_026195
T
1052
K
PK3CA_HUMAN
Unclassified
---
A
T
1052
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(8, 8)
Info
All PROSITE Patterns/Profiles
1: PI3K_ABD (A:16-105)
2: PI3K_RBD (A:187-289)
3: PI3K_C2 (A:330-487)
4: SH2 (B:333-428|-)
5: PIK_HELICAL (A:524-694)
6: PI3_4_KINASE_3 (A:797-1062)
7: PI3_4_KINASE_1 (A:801-815)
8: PI3_4_KINASE_2 (A:900-920)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PI3K_ABD
PS51544
Phosphatidylinositol 3-kinase adaptor-binding (PI3K ABD) domain profile.
PK3CA_HUMAN
16-105
1
A:16-105
2
PI3K_RBD
PS51546
Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain profile.
PK3CA_HUMAN
187-289
1
A:187-289
3
PI3K_C2
PS51547
Phosphatidylinositol 3-kinase C2 (PI3K C2) domain profile.
PK3CA_HUMAN
330-487
1
A:330-487
4
SH2
PS50001
Src homology 2 (SH2) domain profile.
P85A_HUMAN
333-428
624-718
1
B:333-428
-
5
PIK_HELICAL
PS51545
PIK helical domain profile.
PK3CA_HUMAN
517-694
1
A:524-694
6
PI3_4_KINASE_3
PS50290
Phosphatidylinositol 3- and 4-kinases family profile.
PK3CA_HUMAN
797-1068
1
A:797-1062
7
PI3_4_KINASE_1
PS00915
Phosphatidylinositol 3- and 4-kinases signature 1.
PK3CA_HUMAN
801-815
1
A:801-815
8
PI3_4_KINASE_2
PS00916
Phosphatidylinositol 3- and 4-kinases signature 2.
PK3CA_HUMAN
900-920
1
A:900-920
[
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]
Exons
(0, 0)
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Pfam Domains
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