PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3HHC
Asym. Unit
Info
Asym.Unit (202 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (91 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
INTERFERON-LAMBDA IS FUNCTIONALLY AN INTERFERON BUT STRUCTURALLY RELATED TO THE IL-10 FAMILY
Authors
:
H. H. Gad, O. J. Hamming, Hartmann R.
Date
:
15 May 09 (Deposition) - 21 Jul 09 (Release) - 11 Aug 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Interferon, Il-22, Antiviral, Antiviral Defense, Cytokine, Secreted
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. H. Gad, C. Dellgren, O. J. Hamming, S. Vends, S. R. Paludan, R. Hartmann
Interferon-{Lambda} Is Functionally An Interferon But Structurally Related To The Interleukin-10 Family
J. Biol. Chem. V. 284 20869 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 35)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1aa: IODIDE ION (IODaa)
1ab: IODIDE ION (IODab)
1ac: IODIDE ION (IODac)
1ad: IODIDE ION (IODad)
1ae: IODIDE ION (IODae)
1af: IODIDE ION (IODaf)
1ag: IODIDE ION (IODag)
1ah: IODIDE ION (IODah)
1ai: IODIDE ION (IODai)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
1y: IODIDE ION (IODy)
1z: IODIDE ION (IODz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
35
Ligand/Ion
IODIDE ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:92
BINDING SITE FOR RESIDUE IOD A 164
02
AC2
SOFTWARE
ARG B:101
BINDING SITE FOR RESIDUE IOD A 165
03
AC3
SOFTWARE
GLU A:29 , ARG C:41 , ARG C:45
BINDING SITE FOR RESIDUE IOD A 169
04
AC4
SOFTWARE
TRP A:47 , ARG A:124
BINDING SITE FOR RESIDUE IOD A 170
05
AC5
SOFTWARE
PHE A:146
BINDING SITE FOR RESIDUE IOD A 171
06
AC6
SOFTWARE
ASP A:48 , ARG A:50 , ARG A:151 , ASP A:152
BINDING SITE FOR RESIDUE IOD A 172
07
AC7
SOFTWARE
ASN A:154 , SER A:158 , HOH A:186
BINDING SITE FOR RESIDUE IOD A 173
08
AC8
SOFTWARE
GLN B:88 , THR B:92
BINDING SITE FOR RESIDUE IOD B 164
09
AC9
SOFTWARE
LYS B:24
BINDING SITE FOR RESIDUE IOD B 165
10
BC1
SOFTWARE
HIS B:120
BINDING SITE FOR RESIDUE IOD B 167
11
BC2
SOFTWARE
ASN B:154 , SER B:158 , LEU B:161 , CYS B:162
BINDING SITE FOR RESIDUE IOD B 168
12
BC3
SOFTWARE
GLN A:105 , GLY B:111
BINDING SITE FOR RESIDUE IOD B 170
13
BC4
SOFTWARE
THR C:92
BINDING SITE FOR RESIDUE IOD C 164
14
BC5
SOFTWARE
PHE C:146
BINDING SITE FOR RESIDUE IOD C 165
15
BC6
SOFTWARE
ASP C:48 , ARG C:50 , ASP C:152
BINDING SITE FOR RESIDUE IOD C 166
16
BC7
SOFTWARE
GLN C:53
BINDING SITE FOR RESIDUE IOD C 167
17
BC8
SOFTWARE
LYS C:70
BINDING SITE FOR RESIDUE IOD C 168
18
BC9
SOFTWARE
ARG C:2
BINDING SITE FOR RESIDUE IOD C 169
19
CC1
SOFTWARE
PRO B:112
BINDING SITE FOR RESIDUE IOD C 170
20
CC2
SOFTWARE
HIS C:91 , HIS C:95
BINDING SITE FOR RESIDUE IOD C 171
21
CC3
SOFTWARE
LYS A:21
BINDING SITE FOR RESIDUE IOD C 172
22
CC4
SOFTWARE
ARG A:45 , GLU C:29
BINDING SITE FOR RESIDUE IOD C 173
23
CC5
SOFTWARE
HIS C:120
BINDING SITE FOR RESIDUE IOD C 174
24
CC6
SOFTWARE
ILE C:6
BINDING SITE FOR RESIDUE IOD C 176
25
CC7
SOFTWARE
GLU B:29 , ARG D:41 , ARG D:45
BINDING SITE FOR RESIDUE IOD D 164
26
CC8
SOFTWARE
PHE D:146
BINDING SITE FOR RESIDUE IOD D 165
27
CC9
SOFTWARE
LYS D:70
BINDING SITE FOR RESIDUE IOD D 167
28
DC1
SOFTWARE
GLN D:88 , PRO D:89
BINDING SITE FOR RESIDUE IOD D 168
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_063420 (K37R, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063420
K
70
R
IFNL3_HUMAN
Polymorphism
8103142
A/B/C/D
K
37
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (202 KB)
Header - Asym.Unit
Biol.Unit 1 (107 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3HHC
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
