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3HG2
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (136 KB)
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(1)
Title
:
HUMAN ALPHA-GALACTOSIDASE CATALYTIC MECHANISM 1. EMPTY ACTIVE SITE
Authors
:
A. I. Guce, N. E. Clark, S. C. Garman
Date
:
13 May 09 (Deposition) - 24 Nov 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glycoprotein, Carbohydrate-Binding Protein, Glycosidase, Lysosomal Enzyme, (Beta/Alpha)8 Barrel, Disease Mutation, Disulfide Bond, Hydrolase, Lysosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. I. Guce, N. E. Clark, E. N. Salgado, D. R. Ivanen, A. A. Kulminskaya, H. Brumer, S. C. Garman
Catalytic Mechanism Of Human Alpha-Galactosidase.
J. Biol. Chem. V. 285 3625 2010
[
close entry info
]
Hetero Components
(6, 18)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: ALPHA-L-FUCOSE (FUCa)
4a: BETA-D-GALACTOSE (GALa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
3
Ligand/Ion
ACETIC ACID
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
5
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:139 , PHE A:149 , TYR A:173 , CYS A:174 , ASP A:175 , ASN A:179 , FUC A:644
BINDING SITE FOR RESIDUE NAG A 639
02
AC2
SOFTWARE
NAG A:639
BINDING SITE FOR RESIDUE FUC A 644
03
AC3
SOFTWARE
ASP A:33 , ASN A:34 , ASN A:192 , NAG A:693 , TRP B:209 , PRO B:210
BINDING SITE FOR RESIDUE NAG A 692
04
AC4
SOFTWARE
ASP A:33 , NAG A:692 , BMA A:694 , PHE B:211
BINDING SITE FOR RESIDUE NAG A 693
05
AC5
SOFTWARE
NAG A:693
BINDING SITE FOR RESIDUE BMA A 694
06
AC6
SOFTWARE
ASN A:215 , GLU A:218 , HOH A:1302
BINDING SITE FOR RESIDUE NAG A 715
07
AC7
SOFTWARE
LEU A:32 , ASP A:33 , ARG A:220 , GLN A:221 , HOH A:1158
BINDING SITE FOR RESIDUE SO4 A 822
08
AC8
SOFTWARE
ARG A:332 , ILE A:367 , ALA A:368 , SER A:371 , ARG A:402
BINDING SITE FOR RESIDUE SO4 A 823
09
AC9
SOFTWARE
HIS A:406
BINDING SITE FOR RESIDUE ACY A 841
10
BC1
SOFTWARE
ASN B:139 , PHE B:149 , TYR B:173 , ASN B:179 , HOH B:1149
BINDING SITE FOR RESIDUE NAG B 639
11
BC2
SOFTWARE
ASP B:33 , ASN B:192 , NAG B:693
BINDING SITE FOR RESIDUE NAG B 692
12
BC3
SOFTWARE
ASP B:33 , NAG B:692 , BMA B:694
BINDING SITE FOR RESIDUE NAG B 693
13
BC4
SOFTWARE
NAG B:693
BINDING SITE FOR RESIDUE BMA B 694
14
BC5
SOFTWARE
ASN B:215 , GLU B:218
BINDING SITE FOR RESIDUE NAG B 715
15
BC6
SOFTWARE
SER B:126 , GLN B:250 , TYR B:329 , HOH B:1165 , HOH B:1303 , HOH B:1307
BINDING SITE FOR RESIDUE GAL B 803
16
BC7
SOFTWARE
ARG B:332 , ILE B:367 , ALA B:368 , SER B:371 , ARG B:402
BINDING SITE FOR RESIDUE SO4 B 821
17
BC8
SOFTWARE
LEU B:32 , ASP B:33 , ARG B:220
BINDING SITE FOR RESIDUE ACY B 842
18
BC9
SOFTWARE
ARG B:118 , ARG B:196
BINDING SITE FOR RESIDUE ACY B 843
[
close Site info
]
SAPs(SNPs)/Variants
(156, 312)
Info
(mutated residues are not available)
All SNPs/Variants
001: VAR_000431 (L32P, chain A/B, )
002: VAR_000432 (N34S, chain A/B, )
003: VAR_000433 (G35R, chain A/B, )
004: VAR_012364 (P40L, chain A/B, )
005: VAR_000434 (P40S, chain A/B, )
006: VAR_062551 (M42L, chain A/B, )
007: VAR_012365 (M42V, chain A/B, )
008: VAR_062552 (G43R, chain A/B, )
009: VAR_062553 (H46P, chain A/B, )
010: VAR_012367 (H46R, chain A/B, )
011: VAR_012368 (H46Y, chain A/B, )
012: VAR_012369 (W47G, chain A/B, )
013: VAR_000435 (R49L, chain A/B, )
014: VAR_012370 (R49P, chain A/B, )
015: VAR_012371 (R49S, chain A/B, )
016: VAR_000436 (C52R, chain A/B, )
017: VAR_000437 (C52S, chain A/B, )
018: VAR_000438 (C56F, chain A/B, )
019: VAR_000439 (C56G, chain A/B, )
020: VAR_012372 (C56Y, chain A/B, )
021: VAR_000440 (E59K, chain A/B, )
022: VAR_032290 (S65T, chain A/B, )
023: VAR_000441 (E66Q, chain A/B, )
024: VAR_000442 (M72V, chain A/B, )
025: VAR_000443 (G85D, chain A/B, )
026: VAR_012373 (Y86C, chain A/B, )
027: VAR_012374 (L89P, chain A/B, )
028: VAR_000444 (L89R, chain A/B, )
029: VAR_012375 (I91T, chain A/B, )
030: VAR_012376 (D92H, chain A/B, )
031: VAR_012377 (D92Y, chain A/B, )
032: VAR_012378 (D93G, chain A/B, )
033: VAR_062554 (D93N, chain A/B, )
034: VAR_012379 (C94S, chain A/B, )
035: VAR_012380 (C94Y, chain A/B, )
036: VAR_012381 (W95S, chain A/B, )
037: VAR_012382 (A97V, chain A/B, )
038: VAR_000445 (R100K, chain A/B, )
039: VAR_012383 (R100T, chain A/B, )
040: VAR_000447 (R112C, chain A/B, )
041: VAR_000448 (R112H, chain A/B, )
042: VAR_062555 (R112S, chain A/B, )
043: VAR_012384 (F113L, chain A/B, )
044: VAR_012385 (F113S, chain A/B, )
045: VAR_062556 (L120V, chain A/B, )
046: VAR_000450 (G128E, chain A/B, )
047: VAR_000451 (L131P, chain A/B, )
048: VAR_012386 (Y134S, chain A/B, )
049: VAR_062557 (A135V, chain A/B, )
050: VAR_012387 (G138R, chain A/B, )
051: VAR_012388 (C142R, chain A/B, )
052: VAR_000452 (C142Y, chain A/B, )
053: VAR_000453 (A143P, chain A/B, )
054: VAR_012389 (A143T, chain A/B, )
055: VAR_000454 (G144V, chain A/B, )
056: VAR_000455 (P146S, chain A/B, )
057: VAR_012390 (S148N, chain A/B, )
058: VAR_012391 (S148R, chain A/B, )
059: VAR_000456 (A156T, chain A/B, )
060: VAR_000457 (A156V, chain A/B, )
061: VAR_012392 (W162C, chain A/B, )
062: VAR_000458 (W162R, chain A/B, )
063: VAR_012393 (G163V, chain A/B, )
064: VAR_000459 (D165V, chain A/B, )
065: VAR_000460 (L166V, chain A/B, )
066: VAR_012394 (D170V, chain A/B, )
067: VAR_062558 (G171D, chain A/B, )
068: VAR_012395 (C172R, chain A/B, )
069: VAR_000461 (C172Y, chain A/B, )
070: VAR_012396 (G183D, chain A/B, )
071: VAR_012397 (M187V, chain A/B, )
072: VAR_062559 (S201F, chain A/B, )
073: VAR_000462 (C202W, chain A/B, )
074: VAR_012398 (C202Y, chain A/B, )
075: VAR_000463 (P205T, chain A/B, )
076: VAR_000464 (N215S, chain A/B, )
077: VAR_012400 (Y216D, chain A/B, )
078: VAR_000465 (I219N, chain A/B, )
079: VAR_062560 (I219T, chain A/B, )
080: VAR_012401 (C223G, chain A/B, )
081: VAR_000466 (N224D, chain A/B, )
082: VAR_012402 (N224S, chain A/B, )
083: VAR_012403 (W226R, chain A/B, )
084: VAR_000467 (R227Q, chain A/B, )
085: VAR_012404 (A230T, chain A/B, )
086: VAR_000468 (D231N, chain A/B, )
087: VAR_062561 (D234E, chain A/B, )
088: VAR_012405 (S235C, chain A/B, )
089: VAR_012406 (W236C, chain A/B, )
090: VAR_012407 (W236L, chain A/B, )
091: VAR_012408 (I242N, chain A/B, )
092: VAR_012409 (D244H, chain A/B, )
093: VAR_000469 (D244N, chain A/B, )
094: VAR_012410 (G258R, chain A/B, )
095: VAR_012411 (P259L, chain A/B, )
096: VAR_012412 (P259R, chain A/B, )
097: VAR_012413 (G260A, chain A/B, )
098: VAR_012414 (G261D, chain A/B, )
099: VAR_012415 (N263S, chain A/B, )
100: VAR_000471 (D264V, chain A/B, )
101: VAR_062562 (D264Y, chain A/B, )
102: VAR_012416 (P265R, chain A/B, )
103: VAR_032291 (D266H, chain A/B, )
104: VAR_012418 (D266N, chain A/B, )
105: VAR_000472 (D266V, chain A/B, )
106: VAR_012419 (M267I, chain A/B, )
107: VAR_000473 (V269A, chain A/B, )
108: VAR_000474 (N272K, chain A/B, )
109: VAR_032292 (N272S, chain A/B, )
110: VAR_062563 (S276G, chain A/B, )
111: VAR_000475 (Q279E, chain A/B, )
112: VAR_012420 (Q279H, chain A/B, )
113: VAR_012421 (Q280H, chain A/B, )
114: VAR_000476 (M284T, chain A/B, )
115: VAR_062564 (A285P, chain A/B, )
116: VAR_012422 (W287C, chain A/B, )
117: VAR_012423 (W287G, chain A/B, )
118: VAR_000477 (A288D, chain A/B, )
119: VAR_012424 (I289F, chain A/B, )
120: VAR_012425 (M296I, chain A/B, )
121: VAR_000478 (M296V, chain A/B, )
122: VAR_000479 (S297F, chain A/B, )
123: VAR_012426 (N298H, chain A/B, )
124: VAR_000480 (N298K, chain A/B, )
125: VAR_012427 (N298S, chain A/B, )
126: VAR_062565 (L300F, chain A/B, )
127: VAR_000481 (R301Q, chain A/B, )
128: VAR_000482 (D313Y, chain A/B, )
129: VAR_000483 (V316E, chain A/B, )
130: VAR_012430 (N320K, chain A/B, )
131: VAR_012431 (N320Y, chain A/B, )
132: VAR_012432 (Q321E, chain A/B, )
133: VAR_000484 (Q327K, chain A/B, )
134: VAR_000486 (G328A, chain A/B, )
135: VAR_000485 (G328R, chain A/B, )
136: VAR_062566 (G328V, chain A/B, )
137: VAR_062567 (E338K, chain A/B, )
138: VAR_012433 (W340R, chain A/B, )
139: VAR_012434 (E341K, chain A/B, )
140: VAR_000487 (R342Q, chain A/B, )
141: VAR_062568 (R356Q, chain A/B, )
142: VAR_000488 (R356W, chain A/B, )
143: VAR_062569 (E358A, chain A/B, )
144: VAR_000489 (E358K, chain A/B, )
145: VAR_062570 (G360C, chain A/B, )
146: VAR_000491 (G361R, chain A/B, )
147: VAR_012435 (R363H, chain A/B, )
148: VAR_012436 (G373D, chain A/B, )
149: VAR_012437 (G373S, chain A/B, )
150: VAR_012438 (A377D, chain A/B, )
151: VAR_012439 (C378Y, chain A/B, )
152: VAR_000493 (F396Y, chain A/B, )
153: VAR_012440 (P409A, chain A/B, )
154: VAR_012441 (P409T, chain A/B, )
155: VAR_032293 (T410A, chain A/B, )
156: VAR_062571 (L414S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_000431
L
32
P
AGAL_HUMAN
Disease (FD)
---
A/B
L
32
P
002
UniProt
VAR_000432
N
34
S
AGAL_HUMAN
Disease (FD)
28935192
A/B
N
34
S
003
UniProt
VAR_000433
G
35
R
AGAL_HUMAN
Disease (FD)
---
A/B
G
35
R
004
UniProt
VAR_012364
P
40
L
AGAL_HUMAN
Disease (FD)
---
A/B
P
40
L
005
UniProt
VAR_000434
P
40
S
AGAL_HUMAN
Disease (FD)
---
A/B
P
40
S
006
UniProt
VAR_062551
M
42
L
AGAL_HUMAN
Disease (FD)
---
A/B
M
42
L
007
UniProt
VAR_012365
M
42
V
AGAL_HUMAN
Disease (FD)
---
A/B
M
42
V
008
UniProt
VAR_062552
G
43
R
AGAL_HUMAN
Disease (FD)
---
A/B
G
43
R
009
UniProt
VAR_062553
H
46
P
AGAL_HUMAN
Disease (FD)
---
A/B
H
46
P
010
UniProt
VAR_012367
H
46
R
AGAL_HUMAN
Disease (FD)
---
A/B
H
46
R
011
UniProt
VAR_012368
H
46
Y
AGAL_HUMAN
Disease (FD)
---
A/B
H
46
Y
012
UniProt
VAR_012369
W
47
G
AGAL_HUMAN
Disease (FD)
---
A/B
W
47
G
013
UniProt
VAR_000435
R
49
L
AGAL_HUMAN
Disease (FD)
---
A/B
R
49
L
014
UniProt
VAR_012370
R
49
P
AGAL_HUMAN
Disease (FD)
---
A/B
R
49
P
015
UniProt
VAR_012371
R
49
S
AGAL_HUMAN
Disease (FD)
---
A/B
R
49
S
016
UniProt
VAR_000436
C
52
R
AGAL_HUMAN
Disease (FD)
---
A/B
C
52
R
017
UniProt
VAR_000437
C
52
S
AGAL_HUMAN
Disease (FD)
---
A/B
C
52
S
018
UniProt
VAR_000438
C
56
F
AGAL_HUMAN
Disease (FD)
---
A/B
C
56
F
019
UniProt
VAR_000439
C
56
G
AGAL_HUMAN
Disease (FD)
28935193
A/B
C
56
G
020
UniProt
VAR_012372
C
56
Y
AGAL_HUMAN
Disease (FD)
---
A/B
C
56
Y
021
UniProt
VAR_000440
E
59
K
AGAL_HUMAN
Disease (FD)
---
A/B
E
59
K
022
UniProt
VAR_032290
S
65
T
AGAL_HUMAN
Disease (FD)
---
A/B
S
65
T
023
UniProt
VAR_000441
E
66
Q
AGAL_HUMAN
Disease (FD)
28935191
A/B
E
66
Q
024
UniProt
VAR_000442
M
72
V
AGAL_HUMAN
Disease (FD)
---
A/B
M
72
V
025
UniProt
VAR_000443
G
85
D
AGAL_HUMAN
Disease (FD)
---
A/B
G
85
D
026
UniProt
VAR_012373
Y
86
C
AGAL_HUMAN
Disease (FD)
---
A/B
Y
86
C
027
UniProt
VAR_012374
L
89
P
AGAL_HUMAN
Disease (FD)
---
A/B
L
89
P
028
UniProt
VAR_000444
L
89
R
AGAL_HUMAN
Disease (FD)
---
A/B
L
89
R
029
UniProt
VAR_012375
I
91
T
AGAL_HUMAN
Disease (FD)
---
A/B
I
91
T
030
UniProt
VAR_012376
D
92
H
AGAL_HUMAN
Disease (FD)
---
A/B
D
92
H
031
UniProt
VAR_012377
D
92
Y
AGAL_HUMAN
Disease (FD)
---
A/B
D
92
Y
032
UniProt
VAR_012378
D
93
G
AGAL_HUMAN
Disease (FD)
---
A/B
D
93
G
033
UniProt
VAR_062554
D
93
N
AGAL_HUMAN
Disease (FD)
---
A/B
D
93
N
034
UniProt
VAR_012379
C
94
S
AGAL_HUMAN
Disease (FD)
---
A/B
C
94
S
035
UniProt
VAR_012380
C
94
Y
AGAL_HUMAN
Disease (FD)
---
A/B
C
94
Y
036
UniProt
VAR_012381
W
95
S
AGAL_HUMAN
Disease (FD)
---
A/B
W
95
S
037
UniProt
VAR_012382
A
97
V
AGAL_HUMAN
Disease (FD)
---
A/B
A
97
V
038
UniProt
VAR_000445
R
100
K
AGAL_HUMAN
Disease (FD)
---
A/B
R
100
K
039
UniProt
VAR_012383
R
100
T
AGAL_HUMAN
Disease (FD)
---
A/B
R
100
T
040
UniProt
VAR_000447
R
112
C
AGAL_HUMAN
Disease (FD)
---
A/B
R
112
C
041
UniProt
VAR_000448
R
112
H
AGAL_HUMAN
Disease (FD)
---
A/B
R
112
H
042
UniProt
VAR_062555
R
112
S
AGAL_HUMAN
Disease (FD)
---
A/B
R
112
S
043
UniProt
VAR_012384
F
113
L
AGAL_HUMAN
Disease (FD)
---
A/B
F
113
L
044
UniProt
VAR_012385
F
113
S
AGAL_HUMAN
Disease (FD)
---
A/B
F
113
S
045
UniProt
VAR_062556
L
120
V
AGAL_HUMAN
Disease (FD)
---
A/B
L
120
V
046
UniProt
VAR_000450
G
128
E
AGAL_HUMAN
Disease (FD)
---
A/B
G
128
E
047
UniProt
VAR_000451
L
131
P
AGAL_HUMAN
Disease (FD)
---
A/B
L
131
P
048
UniProt
VAR_012386
Y
134
S
AGAL_HUMAN
Disease (FD)
---
A/B
Y
134
S
049
UniProt
VAR_062557
A
135
V
AGAL_HUMAN
Disease (FD)
---
A/B
A
135
V
050
UniProt
VAR_012387
G
138
R
AGAL_HUMAN
Disease (FD)
---
A/B
G
138
R
051
UniProt
VAR_012388
C
142
R
AGAL_HUMAN
Disease (FD)
---
A/B
C
142
R
052
UniProt
VAR_000452
C
142
Y
AGAL_HUMAN
Disease (FD)
---
A/B
C
142
Y
053
UniProt
VAR_000453
A
143
P
AGAL_HUMAN
Disease (FD)
---
A/B
A
143
P
054
UniProt
VAR_012389
A
143
T
AGAL_HUMAN
Disease (FD)
---
A/B
A
143
T
055
UniProt
VAR_000454
G
144
V
AGAL_HUMAN
Disease (FD)
---
A/B
G
144
V
056
UniProt
VAR_000455
P
146
S
AGAL_HUMAN
Disease (FD)
28935194
A/B
P
146
S
057
UniProt
VAR_012390
S
148
N
AGAL_HUMAN
Disease (FD)
---
A/B
S
148
N
058
UniProt
VAR_012391
S
148
R
AGAL_HUMAN
Disease (FD)
---
A/B
S
148
R
059
UniProt
VAR_000456
A
156
T
AGAL_HUMAN
Disease (FD)
28935195
A/B
A
156
T
060
UniProt
VAR_000457
A
156
V
AGAL_HUMAN
Disease (FD)
---
A/B
A
156
V
061
UniProt
VAR_012392
W
162
C
AGAL_HUMAN
Disease (FD)
---
A/B
W
162
C
062
UniProt
VAR_000458
W
162
R
AGAL_HUMAN
Disease (FD)
28935196
A/B
W
162
R
063
UniProt
VAR_012393
G
163
V
AGAL_HUMAN
Disease (FD)
---
A/B
G
163
V
064
UniProt
VAR_000459
D
165
V
AGAL_HUMAN
Disease (FD)
---
A/B
D
165
V
065
UniProt
VAR_000460
L
166
V
AGAL_HUMAN
Disease (FD)
---
A/B
L
166
V
066
UniProt
VAR_012394
D
170
V
AGAL_HUMAN
Disease (FD)
---
A/B
D
170
V
067
UniProt
VAR_062558
G
171
D
AGAL_HUMAN
Disease (FD)
---
A/B
G
171
D
068
UniProt
VAR_012395
C
172
R
AGAL_HUMAN
Disease (FD)
---
A/B
C
172
R
069
UniProt
VAR_000461
C
172
Y
AGAL_HUMAN
Disease (FD)
---
A/B
C
172
Y
070
UniProt
VAR_012396
G
183
D
AGAL_HUMAN
Disease (FD)
---
A/B
G
183
D
071
UniProt
VAR_012397
M
187
V
AGAL_HUMAN
Disease (FD)
---
A/B
M
187
V
072
UniProt
VAR_062559
S
201
F
AGAL_HUMAN
Disease (FD)
---
A/B
S
201
F
073
UniProt
VAR_000462
C
202
W
AGAL_HUMAN
Disease (FD)
28936082
A/B
C
202
W
074
UniProt
VAR_012398
C
202
Y
AGAL_HUMAN
Disease (FD)
---
A/B
C
202
Y
075
UniProt
VAR_000463
P
205
T
AGAL_HUMAN
Disease (FD)
---
A/B
P
205
T
076
UniProt
VAR_000464
N
215
S
AGAL_HUMAN
Disease (FD)
28935197
A/B
N
215
S
077
UniProt
VAR_012400
Y
216
D
AGAL_HUMAN
Disease (FD)
---
A/B
Y
216
D
078
UniProt
VAR_000465
I
219
N
AGAL_HUMAN
Disease (FD)
---
A/B
I
219
N
079
UniProt
VAR_062560
I
219
T
AGAL_HUMAN
Disease (FD)
---
A/B
I
219
T
080
UniProt
VAR_012401
C
223
G
AGAL_HUMAN
Disease (FD)
---
A/B
C
223
G
081
UniProt
VAR_000466
N
224
D
AGAL_HUMAN
Disease (FD)
---
A/B
N
224
D
082
UniProt
VAR_012402
N
224
S
AGAL_HUMAN
Disease (FD)
---
A/B
N
224
S
083
UniProt
VAR_012403
W
226
R
AGAL_HUMAN
Disease (FD)
---
A/B
W
226
R
084
UniProt
VAR_000467
R
227
Q
AGAL_HUMAN
Disease (FD)
28935198
A/B
R
227
Q
085
UniProt
VAR_012404
A
230
T
AGAL_HUMAN
Disease (FD)
---
A/B
A
230
T
086
UniProt
VAR_000468
D
231
N
AGAL_HUMAN
Disease (FD)
---
A/B
D
231
N
087
UniProt
VAR_062561
D
234
E
AGAL_HUMAN
Disease (FD)
---
A/B
D
234
E
088
UniProt
VAR_012405
S
235
C
AGAL_HUMAN
Disease (FD)
---
A/B
S
235
C
089
UniProt
VAR_012406
W
236
C
AGAL_HUMAN
Disease (FD)
---
A/B
W
236
C
090
UniProt
VAR_012407
W
236
L
AGAL_HUMAN
Disease (FD)
---
A/B
W
236
L
091
UniProt
VAR_012408
I
242
N
AGAL_HUMAN
Disease (FD)
---
A/B
I
242
N
092
UniProt
VAR_012409
D
244
H
AGAL_HUMAN
Disease (FD)
---
A/B
D
244
H
093
UniProt
VAR_000469
D
244
N
AGAL_HUMAN
Disease (FD)
---
A/B
D
244
N
094
UniProt
VAR_012410
G
258
R
AGAL_HUMAN
Disease (FD)
---
A/B
G
258
R
095
UniProt
VAR_012411
P
259
L
AGAL_HUMAN
Disease (FD)
---
A/B
P
259
L
096
UniProt
VAR_012412
P
259
R
AGAL_HUMAN
Disease (FD)
---
A/B
P
259
R
097
UniProt
VAR_012413
G
260
A
AGAL_HUMAN
Disease (FD)
---
A/B
G
260
A
098
UniProt
VAR_012414
G
261
D
AGAL_HUMAN
Disease (FD)
---
A/B
G
261
D
099
UniProt
VAR_012415
N
263
S
AGAL_HUMAN
Disease (FD)
---
A/B
N
263
S
100
UniProt
VAR_000471
D
264
V
AGAL_HUMAN
Disease (FD)
28935486
A/B
D
264
V
101
UniProt
VAR_062562
D
264
Y
AGAL_HUMAN
Disease (FD)
---
A/B
D
264
Y
102
UniProt
VAR_012416
P
265
R
AGAL_HUMAN
Disease (FD)
---
A/B
P
265
R
103
UniProt
VAR_032291
D
266
H
AGAL_HUMAN
Disease (FD)
---
A/B
D
266
H
104
UniProt
VAR_012418
D
266
N
AGAL_HUMAN
Disease (FD)
---
A/B
D
266
N
105
UniProt
VAR_000472
D
266
V
AGAL_HUMAN
Disease (FD)
28935487
A/B
D
266
V
106
UniProt
VAR_012419
M
267
I
AGAL_HUMAN
Disease (FD)
---
A/B
M
267
I
107
UniProt
VAR_000473
V
269
A
AGAL_HUMAN
Disease (FD)
28935488
A/B
V
269
A
108
UniProt
VAR_000474
N
272
K
AGAL_HUMAN
Disease (FD)
---
A/B
N
272
K
109
UniProt
VAR_032292
N
272
S
AGAL_HUMAN
Disease (FD)
28935495
A/B
N
272
S
110
UniProt
VAR_062563
S
276
G
AGAL_HUMAN
Disease (FD)
---
A/B
S
276
G
111
UniProt
VAR_000475
Q
279
E
AGAL_HUMAN
Disease (FD)
28935485
A/B
Q
279
E
112
UniProt
VAR_012420
Q
279
H
AGAL_HUMAN
Disease (FD)
---
A/B
Q
279
H
113
UniProt
VAR_012421
Q
280
H
AGAL_HUMAN
Disease (FD)
---
A/B
Q
280
H
114
UniProt
VAR_000476
M
284
T
AGAL_HUMAN
Disease (FD)
---
A/B
M
284
T
115
UniProt
VAR_062564
A
285
P
AGAL_HUMAN
Disease (FD)
---
A/B
A
285
P
116
UniProt
VAR_012422
W
287
C
AGAL_HUMAN
Disease (FD)
---
A/B
W
287
C
117
UniProt
VAR_012423
W
287
G
AGAL_HUMAN
Disease (FD)
---
A/B
W
287
G
118
UniProt
VAR_000477
A
288
D
AGAL_HUMAN
Disease (FD)
---
A/B
A
288
D
119
UniProt
VAR_012424
I
289
F
AGAL_HUMAN
Disease (FD)
---
A/B
I
289
F
120
UniProt
VAR_012425
M
296
I
AGAL_HUMAN
Disease (FD)
---
A/B
M
296
I
121
UniProt
VAR_000478
M
296
V
AGAL_HUMAN
Disease (FD)
---
A/B
M
296
V
122
UniProt
VAR_000479
S
297
F
AGAL_HUMAN
Disease (FD)
28935489
A/B
S
297
F
123
UniProt
VAR_012426
N
298
H
AGAL_HUMAN
Disease (FD)
---
A/B
N
298
H
124
UniProt
VAR_000480
N
298
K
AGAL_HUMAN
Disease (FD)
---
A/B
N
298
K
125
UniProt
VAR_012427
N
298
S
AGAL_HUMAN
Disease (FD)
---
A/B
N
298
S
126
UniProt
VAR_062565
L
300
F
AGAL_HUMAN
Disease (FD)
---
A/B
L
300
F
127
UniProt
VAR_000481
R
301
Q
AGAL_HUMAN
Disease (FD)
---
A/B
R
301
Q
128
UniProt
VAR_000482
D
313
Y
AGAL_HUMAN
Disease (FD)
28935490
A/B
D
313
Y
129
UniProt
VAR_000483
V
316
E
AGAL_HUMAN
Disease (FD)
---
A/B
V
316
E
130
UniProt
VAR_012430
N
320
K
AGAL_HUMAN
Disease (FD)
---
A/B
N
320
K
131
UniProt
VAR_012431
N
320
Y
AGAL_HUMAN
Disease (FD)
---
A/B
N
320
Y
132
UniProt
VAR_012432
Q
321
E
AGAL_HUMAN
Disease (FD)
---
A/B
Q
321
E
133
UniProt
VAR_000484
Q
327
K
AGAL_HUMAN
Disease (FD)
28935491
A/B
Q
327
K
134
UniProt
VAR_000486
G
328
A
AGAL_HUMAN
Disease (FD)
28935492
A/B
G
328
A
135
UniProt
VAR_000485
G
328
R
AGAL_HUMAN
Disease (FD)
---
A/B
G
328
R
136
UniProt
VAR_062566
G
328
V
AGAL_HUMAN
Disease (FD)
---
A/B
G
328
V
137
UniProt
VAR_062567
E
338
K
AGAL_HUMAN
Disease (FD)
---
A/B
E
338
K
138
UniProt
VAR_012433
W
340
R
AGAL_HUMAN
Disease (FD)
---
A/B
W
340
R
139
UniProt
VAR_012434
E
341
K
AGAL_HUMAN
Disease (FD)
---
A/B
E
341
K
140
UniProt
VAR_000487
R
342
Q
AGAL_HUMAN
Disease (FD)
28935493
A/B
R
342
Q
141
UniProt
VAR_062568
R
356
Q
AGAL_HUMAN
Disease (FD)
---
A/B
R
356
Q
142
UniProt
VAR_000488
R
356
W
AGAL_HUMAN
Disease (FD)
---
A/B
R
356
W
143
UniProt
VAR_062569
E
358
A
AGAL_HUMAN
Disease (FD)
---
A/B
E
358
A
144
UniProt
VAR_000489
E
358
K
AGAL_HUMAN
Disease (FD)
---
A/B
E
358
K
145
UniProt
VAR_062570
G
360
C
AGAL_HUMAN
Disease (FD)
---
A/B
G
360
C
146
UniProt
VAR_000491
G
361
R
AGAL_HUMAN
Disease (FD)
28935494
A/B
G
361
R
147
UniProt
VAR_012435
R
363
H
AGAL_HUMAN
Disease (FD)
---
A/B
R
363
H
148
UniProt
VAR_012436
G
373
D
AGAL_HUMAN
Disease (FD)
---
A/B
G
373
D
149
UniProt
VAR_012437
G
373
S
AGAL_HUMAN
Disease (FD)
---
A/B
G
373
S
150
UniProt
VAR_012438
A
377
D
AGAL_HUMAN
Disease (FD)
---
A/B
A
377
D
151
UniProt
VAR_012439
C
378
Y
AGAL_HUMAN
Disease (FD)
---
A/B
C
378
Y
152
UniProt
VAR_000493
F
396
Y
AGAL_HUMAN
Unclassified
---
A/B
F
396
Y
153
UniProt
VAR_012440
P
409
A
AGAL_HUMAN
Disease (FD)
---
A/B
P
409
A
154
UniProt
VAR_012441
P
409
T
AGAL_HUMAN
Disease (FD)
---
A/B
P
409
T
155
UniProt
VAR_032293
T
410
A
AGAL_HUMAN
Disease (FD)
---
A/B
T
410
A
156
UniProt
VAR_062571
L
414
S
AGAL_HUMAN
Disease (FD)
---
A/B
L
414
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ALPHA_GALACTOSIDASE (A:85-101,B:85-101)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALPHA_GALACTOSIDASE
PS00512
Alpha-galactosidase signature.
AGAL_HUMAN
85-101
2
A:85-101
B:85-101
[
close PROSITE info
]
Exons
(7, 14)
Info
All Exons
Exon 1.1a (A:32-65 | B:32-65)
Exon 1.2 (A:65-123 | B:65-123)
Exon 1.3b (A:124-183 | B:124-183)
Exon 1.5b (A:183-213 | B:183-213)
Exon 1.7c (A:214-267 | B:214-267)
Exon 1.7f (A:268-333 | B:268-333)
Exon 1.8b (A:334-421 | B:334-422)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3b
4: Boundary 1.3b/1.5b
5: Boundary 1.5b/1.7c
6: Boundary 1.7c/1.7f
7: Boundary 1.7f/1.8b
8: Boundary 1.8b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000218516
1a
ENSE00000674005
X:100662913-100662698
216
AGAL_HUMAN
1-65
65
2
A:32-65
B:32-65
34
34
1.2
ENST00000218516
2
ENSE00000674004
X:100658973-100658799
175
AGAL_HUMAN
65-123
59
2
A:65-123
B:65-123
59
59
1.3b
ENST00000218516
3b
ENSE00000674003
X:100656797-100656620
178
AGAL_HUMAN
124-183
60
2
A:124-183
B:124-183
60
60
1.5b
ENST00000218516
5b
ENSE00000674002
X:100655745-100655654
92
AGAL_HUMAN
183-213
31
2
A:183-213
B:183-213
31
31
1.7c
ENST00000218516
7c
ENSE00000674001
X:100653934-100653773
162
AGAL_HUMAN
214-267
54
2
A:214-267
B:214-267
54
54
1.7f
ENST00000218516
7f
ENSE00000673999
X:100653555-100653358
198
AGAL_HUMAN
268-333
66
2
A:268-333
B:268-333
66
66
1.8b
ENST00000218516
8b
ENSE00001826038
X:100653087-100652791
297
AGAL_HUMAN
334-429
96
2
A:334-421
B:334-422
88
89
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3hg2a2 (A:324-421)
1b: SCOP_d3hg2b2 (B:324-422)
2a: SCOP_d3hg2a1 (A:32-323)
2b: SCOP_d3hg2b1 (B:32-323)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Melibiase
(21)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3hg2a2
A:324-421
1b
d3hg2b2
B:324-422
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Melibiase
(21)
Human (Homo sapiens) [TaxId: 9606]
(16)
2a
d3hg2a1
A:32-323
2b
d3hg2b1
B:32-323
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3hg2A01 (A:32-324)
1b: CATH_3hg2B01 (B:32-324)
2a: CATH_3hg2A02 (A:325-421)
2b: CATH_3hg2B02 (B:325-422)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
3hg2A01
A:32-324
1b
3hg2B01
B:32-324
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Human (Homo sapiens)
(76)
2a
3hg2A02
A:325-421
2b
3hg2B02
B:325-422
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
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(e.g.: "#3cb371" or "60,179,113")
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Asym.Unit (142 KB)
Header - Asym.Unit
Biol.Unit 1 (136 KB)
Header - Biol.Unit 1
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