PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3HEA
Biol. Unit 1
Info
Asym.Unit (291 KB)
Biol.Unit 1 (145 KB)
Biol.Unit 2 (144 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE L29P/L124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Authors
:
R. J. Kazlauskas, J. D. Schrag, J. D. Cheeseman, K. L. Morley
Date
:
08 May 09 (Deposition) - 23 Mar 10 (Release) - 23 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Alpha/Beta Hydrolase, Esterase, Covalent Adduct, Tetrahedral Intermediate, Hydrolase, Oxidoreductase, Peroxidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. T. Yin De, P. Bernhardt, K. L. Morley, Y. Jiang, J. D. Cheeseman, V. Purpero, J. D. Schrag, R. J. Kazlauskas
Switching Catalysis From Hydrolysis To Perhydrolysis In Pseudomonas Fluorescens Esterase.
Biochemistry V. 49 1931 2010
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 23)
Info
All Hetero Components
1a: ETHYL ACETATE (EEEa)
1b: ETHYL ACETATE (EEEb)
1c: ETHYL ACETATE (EEEc)
1d: ETHYL ACETATE (EEEd)
1e: ETHYL ACETATE (EEEe)
1f: ETHYL ACETATE (EEEf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
2w: GLYCEROL (GOLw)
2x: GLYCEROL (GOLx)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EEE
3
Ligand/Ion
ETHYL ACETATE
2
GOL
11
Ligand/Ion
GLYCEROL
3
SO4
9
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC8 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC3 (SOFTWARE)
17: DC4 (SOFTWARE)
18: DC7 (SOFTWARE)
19: DC9 (SOFTWARE)
20: EC2 (SOFTWARE)
21: EC3 (SOFTWARE)
22: EC4 (SOFTWARE)
23: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:1 , TYR A:12 , ASP A:15 , HOH A:377 , GLN C:62
BINDING SITE FOR RESIDUE GOL A 272
02
AC3
SOFTWARE
ASP B:61 , GLN B:62 , SER C:1 , TYR C:12 , LYS C:14 , ASP C:15 , HOH C:337
BINDING SITE FOR RESIDUE GOL C 272
03
AC7
SOFTWARE
LEU A:137 , ALA A:141 , LYS A:144 , THR A:196 , GLU A:200
BINDING SITE FOR RESIDUE GOL A 273
04
AC8
SOFTWARE
LEU B:137 , ALA B:141 , LYS B:144 , THR B:196 , GLU B:200 , HOH B:713
BINDING SITE FOR RESIDUE GOL B 272
05
AC9
SOFTWARE
LEU C:137 , LYS C:144 , THR C:196 , GLU C:200
BINDING SITE FOR RESIDUE GOL C 273
06
BC3
SOFTWARE
ASP A:61 , GLN A:62 , SER B:1 , TYR B:12 , LYS B:14 , ASP B:15 , HOH B:364
BINDING SITE FOR RESIDUE GOL B 273
07
BC6
SOFTWARE
TYR A:163 , VAL A:175 , GLN A:178 , THR A:179 , ILE A:182 , HOH A:310 , HOH A:587
BINDING SITE FOR RESIDUE GOL A 274
08
BC7
SOFTWARE
LEU B:30 , TYR B:163 , VAL B:175 , GLN B:178 , THR B:179 , ILE B:182 , HOH B:294 , HOH B:348 , HOH B:914
BINDING SITE FOR RESIDUE GOL B 274
09
BC8
SOFTWARE
LEU C:30 , TYR C:163 , VAL C:175 , GLN C:178 , THR C:179 , ILE C:182 , HOH C:301 , HOH C:529 , HOH C:552
BINDING SITE FOR RESIDUE GOL C 274
10
CC2
SOFTWARE
GLN C:223 , ILE C:224
BINDING SITE FOR RESIDUE GOL C 275
11
CC3
SOFTWARE
GLN B:223 , ILE B:224
BINDING SITE FOR RESIDUE GOL B 275
12
CC8
SOFTWARE
ASN A:166 , SER C:18 , GLY C:19 , HOH C:1039
BINDING SITE FOR RESIDUE SO4 A 275
13
CC9
SOFTWARE
VAL C:245 , TYR C:246 , LYS C:247 , GLN C:260 , HOH C:396
BINDING SITE FOR RESIDUE SO4 C 276
14
DC1
SOFTWARE
ARG A:106
BINDING SITE FOR RESIDUE SO4 A 276
15
DC2
SOFTWARE
ASP B:70 , ARG B:106 , HOH B:806
BINDING SITE FOR RESIDUE SO4 B 276
16
DC3
SOFTWARE
ARG C:106
BINDING SITE FOR RESIDUE SO4 C 277
17
DC4
SOFTWARE
VAL A:245 , TYR A:246 , LYS A:247 , GLN A:260 , HOH A:699
BINDING SITE FOR RESIDUE SO4 A 277
18
DC7
SOFTWARE
PHE A:3 , VAL A:4 , HIS A:82 , HOH A:1004 , LYS B:247 , ASP B:248
BINDING SITE FOR RESIDUE SO4 A 278
19
DC9
SOFTWARE
VAL B:245 , TYR B:246 , LYS B:247 , GLN B:260 , HOH B:822
BINDING SITE FOR RESIDUE SO4 B 277
20
EC2
SOFTWARE
HIS B:107 , GLN C:173 , HOH C:306 , HOH C:780
BINDING SITE FOR RESIDUE SO4 C 278
21
EC3
SOFTWARE
GLY A:27 , TRP A:28 , PHE A:93 , SER A:94 , MET A:95 , ILE A:224 , HIS A:251
BINDING SITE FOR RESIDUE EEE A 300
22
EC4
SOFTWARE
GLY B:27 , TRP B:28 , PHE B:93 , SER B:94 , MET B:95 , ILE B:224 , HIS B:251
BINDING SITE FOR RESIDUE EEE B 300
23
EC5
SOFTWARE
GLY C:27 , TRP C:28 , PHE C:93 , SER C:94 , MET C:95 , ILE C:224 , HIS C:251
BINDING SITE FOR RESIDUE EEE C 300
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3heaa_ (A:)
1b: SCOP_d3heae_ (E:)
1c: SCOP_d3heaf_ (F:)
1d: SCOP_d3heab_ (B:)
1e: SCOP_d3heac_ (C:)
1f: SCOP_d3head_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Haloperoxidase
(17)
Protein domain
:
automated matches
(7)
Pseudomonas fluorescens [TaxId: 294]
(5)
1a
d3heaa_
A:
1b
d3heae_
E:
1c
d3heaf_
F:
1d
d3heab_
B:
1e
d3heac_
C:
1f
d3head_
D:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3heaA00 (A:1-271)
1b: CATH_3heaB00 (B:1-271)
1c: CATH_3heaC00 (C:1-271)
1d: CATH_3heaD00 (D:1-271)
1e: CATH_3heaE00 (E:1-271)
1f: CATH_3heaF00 (F:1-271)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Pseudomonas fluorescens. Organism_taxid: 294.
(4)
1a
3heaA00
A:1-271
1b
3heaB00
B:1-271
1c
3heaC00
C:1-271
1d
3heaD00
D:1-271
1e
3heaE00
E:1-271
1f
3heaF00
F:1-271
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (291 KB)
Header - Asym.Unit
Biol.Unit 1 (145 KB)
Header - Biol.Unit 1
Biol.Unit 2 (144 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3HEA
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
