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3HDA
Asym. Unit
Info
Asym.Unit (134 KB)
Biol.Unit 1 (127 KB)
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(1)
Title
:
PRTC METHIONINE MUTANTS: M226A_DESY
Authors
:
A. E. Oberholzer, M. Bumann, T. Hege, S. Russo, U. Baumann
Date
:
07 May 09 (Deposition) - 30 Jun 09 (Release) - 17 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.13
Chains
:
Asym. Unit : P,Z
Biol. Unit 1: P,Z (1x)
Keywords
:
Met-Turn, Beta Roll, Metalloprotease, Metzincin, Hydrolase, Metal- Binding, Protease, Secreted, Zymogen
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. E. Oberholzer, M. Bumann, T. Hege, S. Russo, U. Baumann
Metzincin'S Canonical Methionine Is Responsible For The Structural Integrity Of The Zinc-Binding Site
Biol. Chem. V. 390 875 2009
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
7
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG P:265 , GLY P:267 , SER P:269 , ASP P:297 , GLY P:299 , ASP P:302
BINDING SITE FOR RESIDUE CA P 480
2
AC2
SOFTWARE
GLY P:300 , ASP P:302 , THR P:339 , GLU P:341 , HOH P:634 , HOH P:635
BINDING SITE FOR RESIDUE CA P 481
3
AC3
SOFTWARE
GLY P:346 , GLY P:348 , ASP P:350 , GLY P:363 , ALA P:365 , ASP P:368
BINDING SITE FOR RESIDUE CA P 482
4
AC4
SOFTWARE
ASN P:355 , ALA P:357 , ASN P:359 , GLY P:372 , ALA P:374 , ASP P:377
BINDING SITE FOR RESIDUE CA P 483
5
AC5
SOFTWARE
GLY P:364 , GLY P:366 , ASP P:368 , GLY P:381 , ALA P:383 , ASP P:386
BINDING SITE FOR RESIDUE CA P 484
6
AC6
SOFTWARE
HOH P:10 , GLY P:382 , GLY P:384 , ASP P:386 , GLN P:408 , ASP P:412
BINDING SITE FOR RESIDUE CA P 485
7
AC7
SOFTWARE
GLY P:373 , GLY P:375 , ASP P:377 , ASP P:395 , ASP P:402 , HOH P:636
BINDING SITE FOR RESIDUE CA P 487
8
AC8
SOFTWARE
ARG P:265 , GLY P:267 , SER P:269 , HOH P:659
BINDING SITE FOR RESIDUE CL P 1
9
AC9
SOFTWARE
GLN P:110 , SER P:113 , HOH P:508 , HOH P:694
BINDING SITE FOR RESIDUE CL P 3
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (P:185-194)
2: HEMOLYSIN_CALCIUM (P:368-386)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
PRTC_DICCH
185-194
1
P:185-194
2
HEMOLYSIN_CALCIUM
PS00330
Hemolysin-type calcium-binding region signature.
PRTC_DICCH
368-386
1
P:368-386
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3hdap1 (P:259-479)
2a: SCOP_d3hdap2 (P:61-258)
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)
Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded right-handed beta-helix
(140)
Superfamily
:
beta-Roll
(25)
Family
:
Serralysin-like metalloprotease, C-terminal domain
(24)
Protein domain
:
Metalloprotease
(24)
Erwinia chrysanthemi [TaxId: 556]
(9)
1a
d3hdap1
P:259-479
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Serralysin-like metalloprotease, catalytic (N-terminal) domain
(25)
Protein domain
:
Metalloprotease
(24)
Erwinia chrysanthemi [TaxId: 556]
(9)
2a
d3hdap2
P:61-258
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain Z
Asymmetric Unit 1
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Asym.Unit (134 KB)
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