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3HD7
Biol. Unit 2
Info
Asym.Unit (241 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (118 KB)
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(1)
Title
:
HELICAL EXTENSION OF THE NEURONAL SNARE COMPLEX INTO THE MEMBRANE, SPACEGROUP C 1 2 1
Authors
:
A. Stein, G. Weber, M. C. Wahl, R. Jahn
Date
:
07 May 09 (Deposition) - 14 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Membrane Protein, Coiled-Coil, 4-Helical Bundle, Cell Junction, Cytoplasmic Vesicle, Membrane, Phosphoprotein, Synapse, Synaptosome, Transmembrane, Neurotransmitter Transport, Transport, Cell Membrane, Lipoprotein, Palmitate, Exocytosis
(Keyword Search:
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Reference
:
A. Stein, G. Weber, M. C. Wahl, R. Jahn
Helical Extension Of The Neuronal Snare Complex Into The Membrane
Nature V. 460 525 2009
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: GLYCYLGLYCYLGLYCINE (GGGa)
1b: GLYCYLGLYCYLGLYCINE (GGGb)
1c: GLYCYLGLYCYLGLYCINE (GGGc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GGG
1
Ligand/Ion
GLYCYLGLYCYLGLYCINE
2
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC9 (SOFTWARE)
7: BC1 (SOFTWARE)
8: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR E:88 , ARG F:262 , LYS F:265
BINDING SITE FOR RESIDUE GGG E 1
2
AC3
SOFTWARE
TRP A:89 , ASN A:92 , SO4 F:9 , ARG F:263 , MET F:267
BINDING SITE FOR RESIDUE GGG A 117
3
AC4
SOFTWARE
LYS E:85 , ARG E:86 , LYS F:253 , TYR F:257
BINDING SITE FOR RESIDUE SO4 E 117
4
AC5
SOFTWARE
LYS B:260 , ARG B:263 , SO4 F:9 , LYS F:256 , LYS F:260
BINDING SITE FOR RESIDUE SO4 F 2
5
AC6
SOFTWARE
LYS B:256 , LYS B:260 , SO4 F:9 , LYS F:260 , ARG F:263
BINDING SITE FOR RESIDUE SO4 F 3
6
AC9
SOFTWARE
GLY E:26 , HIS E:28 , MET E:29 , ARG F:198
BINDING SITE FOR RESIDUE SO4 E 7
7
BC1
SOFTWARE
ASN A:92 , GGG A:117 , LYS B:264 , SO4 F:2 , SO4 F:3 , LYS F:260 , LYS F:264
BINDING SITE FOR RESIDUE SO4 F 9
8
BC2
SOFTWARE
ASN G:68 , SER H:187
BINDING SITE FOR RESIDUE SO4 H 10
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(4, 6)
Info
All PROSITE Patterns/Profiles
1: T_SNARE (F:192-254)
2: V_SNARE (E:31-91)
3: SYNAPTOBREVIN (E:49-68)
4: SYNTAXIN (F:198-237)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
SNP25_RAT
19-81
140-202
2
-
G:19-81
-
H:141-200
STX1A_RAT
192-254
1
-
F:192-254
2
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
VAMP2_RAT
31-91
1
-
E:31-91
3
SYNAPTOBREVIN
PS00417
Synaptobrevin signature.
VAMP2_RAT
49-68
1
-
E:49-68
4
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX1A_RAT
198-237
1
-
F:198-237
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3hd7C00 (C:8-82)
1b: CATH_3hd7F00 (F:188-286)
1c: CATH_3hd7G00 (G:7-82)
1d: CATH_3hd7B00 (B:189-286)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.110, no name defined]
(17)
Rat (Rattus norvegicus)
(3)
1a
3hd7C00
C:8-82
1b
3hd7F00
F:188-286
1c
3hd7G00
G:7-82
1d
3hd7B00
B:189-286
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Pfam Domains
(0, 0)
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all PFAM domains
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Atom Selection
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Protein
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Protein & NOT Site
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Chain E
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Chain G
Chain H
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (241 KB)
Header - Asym.Unit
Biol.Unit 1 (118 KB)
Header - Biol.Unit 1
Biol.Unit 2 (118 KB)
Header - Biol.Unit 2
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