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3HD7
Biol. Unit 1
Info
Asym.Unit (241 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (118 KB)
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(1)
Title
:
HELICAL EXTENSION OF THE NEURONAL SNARE COMPLEX INTO THE MEMBRANE, SPACEGROUP C 1 2 1
Authors
:
A. Stein, G. Weber, M. C. Wahl, R. Jahn
Date
:
07 May 09 (Deposition) - 14 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Membrane Protein, Coiled-Coil, 4-Helical Bundle, Cell Junction, Cytoplasmic Vesicle, Membrane, Phosphoprotein, Synapse, Synaptosome, Transmembrane, Neurotransmitter Transport, Transport, Cell Membrane, Lipoprotein, Palmitate, Exocytosis
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Reference
:
A. Stein, G. Weber, M. C. Wahl, R. Jahn
Helical Extension Of The Neuronal Snare Complex Into The Membrane
Nature V. 460 525 2009
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCYLGLYCYLGLYCINE (GGGa)
1b: GLYCYLGLYCYLGLYCINE (GGGb)
1c: GLYCYLGLYCYLGLYCINE (GGGc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
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No.
Name
Count
Type
Full Name
1
GGG
2
Ligand/Ion
GLYCYLGLYCYLGLYCINE
2
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AC8 (SOFTWARE)
7: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
LYS A:85 , ARG A:86 , LYS B:253 , TYR B:257
BINDING SITE FOR RESIDUE GGG A 1
2
AC3
SOFTWARE
TRP A:89 , ASN A:92 , SO4 F:9 , ARG F:263 , MET F:267
BINDING SITE FOR RESIDUE GGG A 117
3
AC5
SOFTWARE
LYS B:260 , ARG B:263 , SO4 F:9 , LYS F:256 , LYS F:260
BINDING SITE FOR RESIDUE SO4 F 2
4
AC6
SOFTWARE
LYS B:256 , LYS B:260 , SO4 F:9 , LYS F:260 , ARG F:263
BINDING SITE FOR RESIDUE SO4 F 3
5
AC7
SOFTWARE
ASN C:68 , LYS C:72 , SER D:187 , ARG D:191
BINDING SITE FOR RESIDUE SO4 D 4
6
AC8
SOFTWARE
ARG C:45
BINDING SITE FOR RESIDUE SO4 C 84
7
BC1
SOFTWARE
ASN A:92 , GGG A:117 , LYS B:264 , SO4 F:2 , SO4 F:3 , LYS F:260 , LYS F:264
BINDING SITE FOR RESIDUE SO4 F 9
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(4, 6)
Info
All PROSITE Patterns/Profiles
1: T_SNARE (B:192-254)
2: V_SNARE (A:31-91)
3: SYNAPTOBREVIN (A:49-68)
4: SYNTAXIN (B:198-237)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
SNP25_RAT
19-81
140-202
2
C:19-81
-
D:141-200
-
STX1A_RAT
192-254
1
B:192-254
-
2
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
VAMP2_RAT
31-91
1
A:31-91
-
3
SYNAPTOBREVIN
PS00417
Synaptobrevin signature.
VAMP2_RAT
49-68
1
A:49-68
-
4
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX1A_RAT
198-237
1
B:198-237
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3hd7C00 (C:8-82)
1b: CATH_3hd7F00 (F:188-286)
1c: CATH_3hd7G00 (G:7-82)
1d: CATH_3hd7B00 (B:189-286)
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Organisms
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(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.110, no name defined]
(17)
Rat (Rattus norvegicus)
(3)
1a
3hd7C00
C:8-82
1b
3hd7F00
F:188-286
1c
3hd7G00
G:7-82
1d
3hd7B00
B:189-286
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain D
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (241 KB)
Header - Asym.Unit
Biol.Unit 1 (118 KB)
Header - Biol.Unit 1
Biol.Unit 2 (118 KB)
Header - Biol.Unit 2
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