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3HD7
Asym. Unit
Info
Asym.Unit (241 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (118 KB)
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(1)
Title
:
HELICAL EXTENSION OF THE NEURONAL SNARE COMPLEX INTO THE MEMBRANE, SPACEGROUP C 1 2 1
Authors
:
A. Stein, G. Weber, M. C. Wahl, R. Jahn
Date
:
07 May 09 (Deposition) - 14 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Membrane Protein, Coiled-Coil, 4-Helical Bundle, Cell Junction, Cytoplasmic Vesicle, Membrane, Phosphoprotein, Synapse, Synaptosome, Transmembrane, Neurotransmitter Transport, Transport, Cell Membrane, Lipoprotein, Palmitate, Exocytosis
(Keyword Search:
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Reference
:
A. Stein, G. Weber, M. C. Wahl, R. Jahn
Helical Extension Of The Neuronal Snare Complex Into The Membrane
Nature V. 460 525 2009
[
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: GLYCYLGLYCYLGLYCINE (GGGa)
1b: GLYCYLGLYCYLGLYCINE (GGGb)
1c: GLYCYLGLYCYLGLYCINE (GGGc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GGG
3
Ligand/Ion
GLYCYLGLYCYLGLYCINE
2
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR E:88 , ARG F:262 , LYS F:265
BINDING SITE FOR RESIDUE GGG E 1
02
AC2
SOFTWARE
LYS A:85 , ARG A:86 , LYS B:253 , TYR B:257
BINDING SITE FOR RESIDUE GGG A 1
03
AC3
SOFTWARE
TRP A:89 , ASN A:92 , SO4 F:9 , ARG F:263 , MET F:267
BINDING SITE FOR RESIDUE GGG A 117
04
AC4
SOFTWARE
LYS E:85 , ARG E:86 , LYS F:253 , TYR F:257
BINDING SITE FOR RESIDUE SO4 E 117
05
AC5
SOFTWARE
LYS B:260 , ARG B:263 , SO4 F:9 , LYS F:256 , LYS F:260
BINDING SITE FOR RESIDUE SO4 F 2
06
AC6
SOFTWARE
LYS B:256 , LYS B:260 , SO4 F:9 , LYS F:260 , ARG F:263
BINDING SITE FOR RESIDUE SO4 F 3
07
AC7
SOFTWARE
ASN C:68 , LYS C:72 , SER D:187 , ARG D:191
BINDING SITE FOR RESIDUE SO4 D 4
08
AC8
SOFTWARE
ARG C:45
BINDING SITE FOR RESIDUE SO4 C 84
09
AC9
SOFTWARE
GLY E:26 , HIS E:28 , MET E:29 , ARG F:198
BINDING SITE FOR RESIDUE SO4 E 7
10
BC1
SOFTWARE
ASN A:92 , GGG A:117 , LYS B:264 , SO4 F:2 , SO4 F:3 , LYS F:260 , LYS F:264
BINDING SITE FOR RESIDUE SO4 F 9
11
BC2
SOFTWARE
ASN G:68 , SER H:187
BINDING SITE FOR RESIDUE SO4 H 10
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 12)
Info
All PROSITE Patterns/Profiles
1: T_SNARE (C:19-81,G:19-81|D:141-200,H:141-20...)
2: V_SNARE (A:31-91,E:31-91)
3: SYNAPTOBREVIN (A:49-68,E:49-68)
4: SYNTAXIN (B:198-237,F:198-237)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
SNP25_RAT
19-81
140-202
4
C:19-81
G:19-81
D:141-200
H:141-200
STX1A_RAT
192-254
2
B:192-254
F:192-254
2
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
VAMP2_RAT
31-91
2
A:31-91
E:31-91
3
SYNAPTOBREVIN
PS00417
Synaptobrevin signature.
VAMP2_RAT
49-68
2
A:49-68
E:49-68
4
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX1A_RAT
198-237
2
B:198-237
F:198-237
[
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Exons
(3, 6)
Info
All Exons
Exon 1.8 (B:189-226 | F:188-226)
Exon 1.9 (B:227-263 | F:227-263)
Exon 1.10 (B:264-286 | F:264-286)
View:
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All Exon Boundaries
1: Boundary 1.7/1.8
2: Boundary 1.8/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000049601
1
ENSRNOE00000287178
chr12:
22765064-22765004
61
STX1A_RAT
1-10
10
0
-
-
1.2
ENSRNOT00000049601
2
ENSRNOE00000361256
chr12:
22752097-22752020
78
STX1A_RAT
11-36
26
0
-
-
1.3
ENSRNOT00000049601
3
ENSRNOE00000279130
chr12:
22751752-22751653
100
STX1A_RAT
37-70
34
0
-
-
1.4
ENSRNOT00000049601
4
ENSRNOE00000343385
chr12:
22748087-22748013
75
STX1A_RAT
70-95
26
0
-
-
1.5
ENSRNOT00000049601
5
ENSRNOE00000295520
chr12:
22747334-22747261
74
STX1A_RAT
95-119
25
0
-
-
1.6
ENSRNOT00000049601
6
ENSRNOE00000302188
chr12:
22747159-22747051
109
STX1A_RAT
120-156
37
0
-
-
1.7
ENSRNOT00000049601
7
ENSRNOE00000358330
chr12:
22746606-22746533
74
STX1A_RAT
156-180
25
0
-
-
1.8
ENSRNOT00000049601
8
ENSRNOE00000316992
chr12:
22743199-22743062
138
STX1A_RAT
181-226
46
2
B:189-226
F:188-226
38
39
1.9
ENSRNOT00000049601
9
ENSRNOE00000335636
chr12:
22739362-22739252
111
STX1A_RAT
227-263
37
2
B:227-263
F:227-263
37
37
1.10
ENSRNOT00000049601
10
ENSRNOE00000345574
chr12:
22738422-22737112
1311
STX1A_RAT
264-288
25
2
B:264-286
F:264-286
23
23
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3hd7C00 (C:8-82)
1b: CATH_3hd7F00 (F:188-286)
1c: CATH_3hd7G00 (G:7-82)
1d: CATH_3hd7B00 (B:189-286)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.110, no name defined]
(17)
Rat (Rattus norvegicus)
(3)
1a
3hd7C00
C:8-82
1b
3hd7F00
F:188-286
1c
3hd7G00
G:7-82
1d
3hd7B00
B:189-286
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
(currently selected atoms:
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)
Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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Asym.Unit (241 KB)
Header - Asym.Unit
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