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3HB2
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (156 KB)
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(1)
Title
:
PRTC METHIONINE MUTANTS: M226I
Authors
:
A. E. Oberholzer, M. Bumann, T. Hege, S. Russo, U. Baumann
Date
:
04 May 09 (Deposition) - 04 Aug 09 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : P
Biol. Unit 1: P (1x)
Keywords
:
Met-Turn, Beta Roll, Hydrolase, Metal-Binding, Metalloprotease, Protease, Secreted, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Oberholzer, M. Bumann, T. Hege, S. Russo, U. Baumann
Metzincin'S Canonical Methionine Is Responsible For The Structural Integrity Of The Zinc-Binding Site
Biol. Chem. V. 390 875 2009
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
7
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG P:265 , GLY P:267 , SER P:269 , ASP P:297 , GLY P:299 , ASP P:302
BINDING SITE FOR RESIDUE CA P 480
02
AC2
SOFTWARE
GLY P:300 , ASP P:302 , THR P:339 , GLU P:341 , HOH P:532 , HOH P:533
BINDING SITE FOR RESIDUE CA P 481
03
AC3
SOFTWARE
GLY P:346 , GLY P:348 , ASP P:350 , GLY P:363 , ALA P:365 , ASP P:368
BINDING SITE FOR RESIDUE CA P 482
04
AC4
SOFTWARE
ASN P:355 , ALA P:357 , ASN P:359 , GLY P:372 , ALA P:374 , ASP P:377
BINDING SITE FOR RESIDUE CA P 483
05
AC5
SOFTWARE
GLY P:364 , GLY P:366 , ASP P:368 , GLY P:381 , ALA P:383 , ASP P:386
BINDING SITE FOR RESIDUE CA P 484
06
AC6
SOFTWARE
HOH P:17 , GLY P:382 , GLY P:384 , ASP P:386 , GLN P:408 , ASP P:412
BINDING SITE FOR RESIDUE CA P 485
07
AC7
SOFTWARE
HIS P:188 , HIS P:192 , HIS P:198 , HOH P:556
BINDING SITE FOR RESIDUE ZN P 486
08
AC8
SOFTWARE
GLY P:373 , GLY P:375 , ASP P:377 , ASP P:395 , ASP P:402 , HOH P:535
BINDING SITE FOR RESIDUE CA P 487
09
AC9
SOFTWARE
ASN P:355 , SER P:356 , ALA P:374 , HOH P:895 , HOH P:981
BINDING SITE FOR RESIDUE CL P 1
10
BC1
SOFTWARE
TYR P:146 , ARG P:467 , HOH P:758
BINDING SITE FOR RESIDUE CL P 3
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (P:185-194)
2: HEMOLYSIN_CALCIUM (P:368-386)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
PRTC_DICCH
185-194
1
P:185-194
2
HEMOLYSIN_CALCIUM
PS00330
Hemolysin-type calcium-binding region signature.
PRTC_DICCH
368-386
1
P:368-386
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3hb2p2 (P:259-479)
2a: SCOP_d3hb2p1 (P:18-258)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded right-handed beta-helix
(140)
Superfamily
:
beta-Roll
(25)
Family
:
Serralysin-like metalloprotease, C-terminal domain
(24)
Protein domain
:
Metalloprotease
(24)
Erwinia chrysanthemi [TaxId: 556]
(9)
1a
d3hb2p2
P:259-479
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Serralysin-like metalloprotease, catalytic (N-terminal) domain
(25)
Protein domain
:
Metalloprotease
(24)
Erwinia chrysanthemi [TaxId: 556]
(9)
2a
d3hb2p1
P:18-258
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3hb2P02 (P:36-262)
2a: CATH_3hb2P01 (P:19-35,P:263-479)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Erwinia chrysanthemi. Organism_taxid: 556.
(5)
1a
3hb2P02
P:36-262
Class
:
Mainly Beta
(13760)
Architecture
:
2 Solenoid
(23)
Topology
:
Alkaline Protease, subunit P, domain 1
(23)
Homologous Superfamily
:
Alkaline Protease, subunit P, domain 1
(23)
Erwinia chrysanthemi. Organism_taxid: 556.
(5)
2a
3hb2P01
P:19-35,P:263-479
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain P
Asymmetric Unit 1
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