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Biol. Unit 1
Info
Asym.Unit (220 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (73 KB)
Biol.Unit 3 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE IGE-FC3-4 DOMAINS
Authors
:
B. A. Wurzburg
Date
:
30 Apr 09 (Deposition) - 08 Sep 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Immunoglobin, Ige, Fc, Flexibility, Hydrophobic Pocket, Disulfide Bond, Glycoprotein, Immunoglobulin C Region, Immunoglobulin Domain, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. A. Wurzburg, T. S. Jardetzky
Conformational Flexibility In Immunoglobulin E-Fc 3-4 Revealed In Multiple Crystal Forms.
J. Mol. Biol. V. 393 176 2009
[
close entry info
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAG A:2 , GLN A:392 , ASN A:394 , THR A:396
BINDING SITE FOR RESIDUE NAG A 1
02
AC2
SOFTWARE
NAG A:1 , BMA A:3 , TYR A:339 , THR A:398
BINDING SITE FOR RESIDUE NAG A 2
03
AC3
SOFTWARE
NAG A:2 , MAN A:4 , MAN A:5
BINDING SITE FOR RESIDUE BMA A 3
04
AC4
SOFTWARE
BMA A:3
BINDING SITE FOR RESIDUE MAN A 4
05
AC5
SOFTWARE
BMA A:3
BINDING SITE FOR RESIDUE MAN A 5
06
AC6
SOFTWARE
NAG B:2 , LEU B:363 , GLN B:392 , ASN B:394 , THR B:396
BINDING SITE FOR RESIDUE NAG B 1
07
AC7
SOFTWARE
NAG B:1 , BMA B:3 , TYR B:339 , LEU B:359 , THR B:398
BINDING SITE FOR RESIDUE NAG B 2
08
AC8
SOFTWARE
NAG B:2 , MAN B:4 , MAN B:5
BINDING SITE FOR RESIDUE BMA B 3
09
AC9
SOFTWARE
BMA B:3
BINDING SITE FOR RESIDUE MAN B 4
10
BC1
SOFTWARE
BMA B:3
BINDING SITE FOR RESIDUE MAN B 5
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_003885 (W478L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003885
W
359
L
IGHE_HUMAN
Polymorphism
---
A/B
W
478
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:416-422,B:416-422,A:522-528,B:52...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHE_HUMAN
83-89
297-303
403-409
4
-
A:416-422
B:416-422
-
-
-
-
A:522-528
B:522-528
-
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3ha0a1 (A:336-438)
1b: SCOP_d3ha0a2 (A:439-544)
1c: SCOP_d3ha0b1 (B:336-438)
1d: SCOP_d3ha0b2 (B:439-544)
1e: SCOP_d3ha0c1 (C:336-438)
1f: SCOP_d3ha0c2 (C:439-544)
1g: SCOP_d3ha0d1 (D:336-438)
1h: SCOP_d3ha0d2 (D:439-544)
1i: SCOP_d3ha0e1 (E:336-438)
1j: SCOP_d3ha0e2 (E:439-544)
1k: SCOP_d3ha0f1 (F:336-438)
1l: SCOP_d3ha0f2 (F:439-544)
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Classes
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)
(
)
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(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
1a
d3ha0a1
A:336-438
1b
d3ha0a2
A:439-544
1c
d3ha0b1
B:336-438
1d
d3ha0b2
B:439-544
1e
d3ha0c1
C:336-438
1f
d3ha0c2
C:439-544
1g
d3ha0d1
D:336-438
1h
d3ha0d2
D:439-544
1i
d3ha0e1
E:336-438
1j
d3ha0e2
E:439-544
1k
d3ha0f1
F:336-438
1l
d3ha0f2
F:439-544
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_3ha0A02 (A:436-543)
1b: CATH_3ha0B02 (B:436-543)
1c: CATH_3ha0C02 (C:436-543)
1d: CATH_3ha0D02 (D:436-543)
1e: CATH_3ha0E02 (E:436-543)
1f: CATH_3ha0F02 (F:436-543)
1g: CATH_3ha0A01 (A:336-435)
1h: CATH_3ha0B01 (B:336-435)
1i: CATH_3ha0C01 (C:336-435)
1j: CATH_3ha0D01 (D:336-435)
1k: CATH_3ha0E01 (E:336-435)
1l: CATH_3ha0F01 (F:336-435)
View:
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(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
3ha0A02
A:436-543
1b
3ha0B02
B:436-543
1c
3ha0C02
C:436-543
1d
3ha0D02
D:436-543
1e
3ha0E02
E:436-543
1f
3ha0F02
F:436-543
1g
3ha0A01
A:336-435
1h
3ha0B01
B:336-435
1i
3ha0C01
C:336-435
1j
3ha0D01
D:336-435
1k
3ha0E01
E:336-435
1l
3ha0F01
F:336-435
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (220 KB)
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Header - Biol.Unit 1
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