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3H8I
Asym. Unit
Info
Asym.Unit (128 KB)
Biol.Unit 1 (122 KB)
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(1)
Title
:
THE FIRST X-RAY STRUCTURE OF A SULFIDE:QUINONE OXIDOREDUCTASE: INSIGHTS INTO SULFIDE OXIDATION MECHANISM
Authors
:
J. A. Brito, F. L. Sousa, M. Stelter, T. M. Bandeiras, C. Vonrhein, M. Teixeira, M. M. Pereira, M. Archer
Date
:
29 Apr 09 (Deposition) - 02 Jun 09 (Release) - 23 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Membrane Protein, Rossman-Like Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Brito, F. L. Sousa, M. Stelter, T. M. Bandeiras, C. Vonrhein, M. Teixeira, M. M. Pereira, M. Archer
Structural And Functional Insights Into Sulfide:Quinone Oxidoreductase.
Biochemistry V. 48 5613 2009
(for further references see the
PDB file header
)
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
2g: PHOSPHATE ION (PO4g)
2h: PHOSPHATE ION (PO4h)
2i: PHOSPHATE ION (PO4i)
3a: TRISULFANE (S3Ha)
3b: TRISULFANE (S3Hb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
PO4
9
Ligand/Ion
PHOSPHATE ION
3
S3H
2
Ligand/Ion
TRISULFANE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:8 , GLY A:9 , ARG A:10 , PHE A:11 , GLY A:12 , ASN A:34 , LYS A:35 , ALA A:44 , GLY A:76 , THR A:77 , VAL A:78 , GLY A:108 , ILE A:109 , CYS A:129 , PRO A:181 , ASN A:271 , GLY A:306 , ASP A:307 , LYS A:315 , LEU A:316 , GLY A:317 , TYR A:318 , ALA A:320 , HOH A:411 , HOH A:412 , HOH A:418 , HOH A:420 , HOH A:436 , HOH A:475 , PO4 A:2003
BINDING SITE FOR RESIDUE FAD A 1001
02
AC2
SOFTWARE
CYS A:178 , LYS A:315 , LEU A:316 , CYS A:350
BINDING SITE FOR RESIDUE S3H A 1002
03
AC3
SOFTWARE
SER A:36 , ARG A:37 , GLU A:75 , HOH A:502
BINDING SITE FOR RESIDUE PO4 A 2001
04
AC4
SOFTWARE
HIS A:190 , LYS A:194 , LEU A:199 , GLN A:230 , LYS B:343
BINDING SITE FOR RESIDUE PO4 A 2002
05
AC5
SOFTWARE
ALA A:111 , HIS A:112 , ASN A:271 , PRO A:272 , HOH A:436 , HOH A:453 , HOH A:458 , HOH A:464 , FAD A:1001
BINDING SITE FOR RESIDUE PO4 A 2003
06
AC6
SOFTWARE
PRO A:155 , TYR A:157 , LYS A:240 , HOH A:454 , HOH A:461
BINDING SITE FOR RESIDUE PO4 A 410
07
AC7
SOFTWARE
ALA B:111 , HIS B:112 , ASN B:271 , HOH B:426 , FAD B:1001
BINDING SITE FOR RESIDUE PO4 B 2003
08
AC8
SOFTWARE
GLY B:8 , GLY B:9 , ARG B:10 , PHE B:11 , GLY B:12 , ASN B:34 , LYS B:35 , ALA B:44 , GLY B:76 , THR B:77 , VAL B:78 , GLY B:108 , ILE B:109 , CYS B:129 , PRO B:181 , ASN B:271 , GLY B:306 , ASP B:307 , LYS B:315 , LEU B:316 , GLY B:317 , TYR B:318 , ALA B:320 , HOH B:412 , HOH B:413 , HOH B:419 , HOH B:430 , PO4 B:2003
BINDING SITE FOR RESIDUE FAD B 1001
09
AC9
SOFTWARE
CYS B:178 , LYS B:315 , LEU B:316 , CYS B:350
BINDING SITE FOR RESIDUE S3H B 1002
10
BC1
SOFTWARE
SER B:36 , ARG B:37 , GLU B:75 , HOH B:460
BINDING SITE FOR RESIDUE PO4 B 2001
11
BC2
SOFTWARE
HOH A:487 , HIS B:190 , LYS B:194
BINDING SITE FOR RESIDUE PO4 B 2002
12
BC3
SOFTWARE
LYS A:3 , GLN A:72 , SER B:85 , TYR B:89 , GLU B:99 , HOH B:445 , HOH B:452
BINDING SITE FOR RESIDUE PO4 B 410
13
BC4
SOFTWARE
TYR A:89 , LYS B:92 , ASP B:94 , HOH B:449
BINDING SITE FOR RESIDUE PO4 B 411
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (128 KB)
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