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3H6W
Biol. Unit 2
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Asym.Unit (202 KB)
Biol.Unit 1 (198 KB)
Biol.Unit 2 (197 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE IGLUR2 LIGAND-BINDING CORE (S1S2J-N754S) IN COMPLEX WITH GLUTAMATE AND NS5217 AT 1.50 A RESOLUTION
Authors
:
H. Hald, M. Gajhede, J. S. Kastrup
Date
:
24 Apr 09 (Deposition) - 28 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.49
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Ampa Receptor Ligand-Binding Core, Iglur2 S1S2J-N754S, Allosteric Modulation, Membrane Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. Hald, P. K. Ahring, D. B. Timmermann, T. Liljefors, M. Gajhede, J. S. Kastrup
Distinct Structural Features Of Cyclothiazide Are Responsible For Effects On Peak Current Amplitude And Desensitization Kinetics At Iglur2.
J. Mol. Biol. V. 391 906 2009
(for further references see the
PDB file header
)
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
2a: GLUTAMIC ACID (GLUa)
2b: GLUTAMIC ACID (GLUb)
3a: GLYCEROL (GOLa)
4a: (3R)-3-CYCLOPENTYL-6-METHYL-7-[(4-... (NS7a)
4b: (3R)-3-CYCLOPENTYL-6-METHYL-7-[(4-... (NS7b)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
2
GLU
2
Mod. Amino Acid
GLUTAMIC ACID
3
GOL
-1
Ligand/Ion
GLYCEROL
4
NS7
2
Ligand/Ion
(3R)-3-CYCLOPENTYL-6-METHYL-7-[(4-METHYLPIPERAZIN-1-YL)SULFONYL]-3,4-DIHYDRO-2H-1,2-BENZOTHIAZINE 1,1-DIOXIDE
5
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
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No.
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Evidence
Residues
Description
1
AC5
SOFTWARE
TYR B:61 , PRO B:89 , LEU B:90 , THR B:91 , ARG B:96 , GLY B:141 , SER B:142 , THR B:143 , GLU B:193 , TYR B:220 , HOH B:296 , HOH B:298 , HOH B:333
BINDING SITE FOR RESIDUE GLU B 264
2
AC6
SOFTWARE
PRO B:105 , MET B:107 , SER B:108 , LEU B:239 , ASP B:248 , LYS B:251 , HOH B:281 , HOH B:304 , HOH B:326 , HOH B:678
BINDING SITE FOR RESIDUE NS7 B 265
3
AC7
SOFTWARE
SER B:140 , LYS B:144 , ARG B:148 , HOH B:357 , HOH B:454 , HOH B:519
BINDING SITE FOR RESIDUE SO4 B 266
4
AC8
SOFTWARE
ARG B:203 , LYS B:258 , GLU B:260 , HOH B:431
BINDING SITE FOR RESIDUE DMS B 267
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3h6wa_ (A:)
1b: SCOP_d3h6wb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d3h6wa_
A:
1b
d3h6wb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3h6wA01 (A:4-109,A:219-258)
1b: CATH_3h6wB01 (B:4-109,B:219-258)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Rat (Rattus norvegicus)
(37)
1a
3h6wA01
A:4-109,A:219-258
1b
3h6wB01
B:4-109,B:219-258
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Pfam Domains
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Asym.Unit (202 KB)
Header - Asym.Unit
Biol.Unit 1 (198 KB)
Header - Biol.Unit 1
Biol.Unit 2 (197 KB)
Header - Biol.Unit 2
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