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3H6U
Biol. Unit 1
Info
Asym.Unit (58 KB)
Biol.Unit 1 (104 KB)
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Title
:
CRYSTAL STRUCTURE OF THE IGLUR2 LIGAND-BINDING CORE (S1S2J-N754S) IN COMPLEX WITH GLUTAMATE AND NS1493 AT 1.85 A RESOLUTION
Authors
:
H. Hald, M. Gajhede, J. S. Kastrup
Date
:
24 Apr 09 (Deposition) - 28 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Ampa Receptor Ligand-Bidning Core, Iglur2 S1S2J-N754S, Allosteric Modulation, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Hald, P. K. Ahring, D. B. Timmermann, T. Liljefors, M. Gajhede, J. S. Kastrup
Distinct Structural Features Of Cyclothiazide Are Responsible For Effects On Peak Current Amplitude And Desensitization Kinetics At Iglur2.
J. Mol. Biol. V. 391 906 2009
(for further references see the
PDB file header
)
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Hetero Components
(5, 22)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
2a: GLUTAMIC ACID (GLUa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: (3S)-3-CYCLOPENTYL-6-METHYL-7-[(4-... (NS3a)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FLC
2
Ligand/Ion
CITRATE ANION
2
GLU
2
Mod. Amino Acid
GLUTAMIC ACID
3
GOL
4
Ligand/Ion
GLYCEROL
4
NS3
2
Ligand/Ion
(3S)-3-CYCLOPENTYL-6-METHYL-7-[(4-METHYLPIPERAZIN-1-YL)SULFONYL]-3,4-DIHYDRO-2H-1,2,4-BENZOTHIADIAZINE 1,1-DIOXIDE
5
SO4
12
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , GLY A:141 , SER A:142 , THR A:143 , GLU A:193 , TYR A:220 , HOH A:388 , HOH A:438 , HOH A:479
BINDING SITE FOR RESIDUE GLU A 264
02
AC2
SOFTWARE
ILE A:92 , PRO A:105 , MET A:107 , SER A:108 , SER A:217 , GLY A:219 , SER A:242 , ASP A:248 , HOH A:410 , HOH A:516 , HOH A:548 , HOH A:637
BINDING SITE FOR RESIDUE NS3 A 265
03
AC3
SOFTWARE
ARG A:31 , HIS A:46 , LYS A:240 , GLN A:244 , GOL A:273 , HOH A:525 , HOH A:579 , HOH A:581
BINDING SITE FOR RESIDUE SO4 A 266
04
AC4
SOFTWARE
ASP A:139 , SER A:140 , LYS A:144 , ARG A:148 , HOH A:411 , HOH A:457 , HOH A:593 , HOH A:604
BINDING SITE FOR RESIDUE SO4 A 267
05
AC5
SOFTWARE
GLU A:27 , GLY A:28 , ASN A:29 , GLU A:30 , ARG A:149 , FLC A:274 , HOH A:349 , HOH A:612
BINDING SITE FOR RESIDUE SO4 A 268
06
AC6
SOFTWARE
ASN A:22 , LEU A:26 , ARG A:64 , LYS A:69 , HOH A:526 , HOH A:626 , HOH A:647
BINDING SITE FOR RESIDUE SO4 A 269
07
AC7
SOFTWARE
LYS A:82 , LYS A:116
BINDING SITE FOR RESIDUE SO4 A 270
08
AC8
SOFTWARE
SER A:194 , GLU A:198 , ASN A:214 , HOH A:277 , HOH A:508 , HOH A:601
BINDING SITE FOR RESIDUE SO4 A 271
09
AC9
SOFTWARE
GLU A:33 , TRP A:254 , LYS A:258 , HOH A:412
BINDING SITE FOR RESIDUE GOL A 272
10
BC1
SOFTWARE
GLU A:42 , LYS A:45 , HIS A:46 , LEU A:241 , GLN A:244 , SO4 A:266 , HOH A:525 , HOH A:546 , HOH A:631
BINDING SITE FOR RESIDUE GOL A 273
11
BC2
SOFTWARE
ARG A:148 , ARG A:149 , TRP A:159 , ARG A:163 , SO4 A:268
BINDING SITE FOR RESIDUE FLC A 274
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3h6ua_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d3h6ua_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3h6uA01 (A:4-109,A:219-258)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Rat (Rattus norvegicus)
(37)
1a
3h6uA01
A:4-109,A:219-258
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Pfam Domains
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Chain A
Asymmetric Unit 1
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