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3H6T
Asym. Unit
Info
Asym.Unit (158 KB)
Biol.Unit 1 (101 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE IGLUR2 LIGAND-BINDING CORE (S1S2J-N754S) IN COMPLEX WITH GLUTAMATE AND CYCLOTHIAZIDE AT 2.25 A RESOLUTION
Authors
:
H. Hald, M. Gajhede, J. S. Kastrup
Date
:
24 Apr 09 (Deposition) - 28 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (2x)
Keywords
:
Ampa Receptor Ligand-Binding Core, Iglur2 S1S2J-N754S, Cyclothiazide, Allosteric Modulation, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Hald, P. K. Ahring, D. B. Timmermann, T. Liljefors, M. Gajhede, J. S. Kastrup
Distinct Structural Features Of Cyclothiazide Are Responsible For Effects On Peak Current Amplitude And Desensitization Kinetics At Iglur2.
J. Mol. Biol. V. 391 906 2009
(for further references see the
PDB file header
)
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Hetero Components
(7, 29)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CACODYLATE ION (CACa)
3a: CYCLOTHIAZIDE (CYZa)
3b: CYCLOTHIAZIDE (CYZb)
3c: CYCLOTHIAZIDE (CYZc)
4a: DIMETHYL SULFOXIDE (DMSa)
5a: GLUTAMIC ACID (GLUa)
5b: GLUTAMIC ACID (GLUb)
5c: GLUTAMIC ACID (GLUc)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
6f: GLYCEROL (GOLf)
6g: GLYCEROL (GOLg)
6h: GLYCEROL (GOLh)
6i: GLYCEROL (GOLi)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
7d: ZINC ION (ZNd)
7e: ZINC ION (ZNe)
7f: ZINC ION (ZNf)
7g: ZINC ION (ZNg)
7h: ZINC ION (ZNh)
7i: ZINC ION (ZNi)
7j: ZINC ION (ZNj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CAC
1
Ligand/Ion
CACODYLATE ION
3
CYZ
3
Ligand/Ion
CYCLOTHIAZIDE
4
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
5
GLU
3
Mod. Amino Acid
GLUTAMIC ACID
6
GOL
9
Ligand/Ion
GLYCEROL
7
ZN
10
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , LEU A:138 , GLY A:141 , SER A:142 , THR A:143 , GLU A:193 , TYR A:220 , HOH A:277 , HOH A:360
BINDING SITE FOR RESIDUE GLU A 264
02
AC2
SOFTWARE
PRO A:105 , MET A:107 , SER A:108 , LEU A:239 , SER A:242 , LEU A:247 , ASP A:248 , HOH A:281 , HOH A:328 , HOH A:351 , HOH A:356 , SER C:217 , LYS C:218 , GLY C:219 , HOH C:473
BINDING SITE FOR RESIDUE CYZ A 265
03
AC3
SOFTWARE
GLU A:42 , HIS A:46 , GLU B:166 , CAC B:274
BINDING SITE FOR RESIDUE ZN A 266
04
AC4
SOFTWARE
HIS A:23 , ACT A:271 , HOH A:843 , ASP C:65
BINDING SITE FOR RESIDUE ZN A 267
05
AC5
SOFTWARE
GLU A:122 , ASP A:126 , HOH A:566 , HOH A:955
BINDING SITE FOR RESIDUE ZN A 268
06
AC6
SOFTWARE
GLU A:24 , HOH A:623 , HOH A:983 , LYS C:60 , ASP C:139 , ARG C:172
BINDING SITE FOR RESIDUE GOL A 269
07
AC7
SOFTWARE
ASN A:214 , ASP A:216 , SER A:217 , HOH A:337 , HOH A:462 , ASP C:248 , CYZ C:265
BINDING SITE FOR RESIDUE GOL A 270
08
AC8
SOFTWARE
HIS A:23 , ZN A:267 , ASP C:65
BINDING SITE FOR RESIDUE ACT A 271
09
AC9
SOFTWARE
GLU A:201 , LYS A:210
BINDING SITE FOR RESIDUE DMS A 272
10
BC1
SOFTWARE
TYR B:61 , PRO B:89 , LEU B:90 , THR B:91 , ARG B:96 , GLY B:141 , SER B:142 , THR B:143 , GLU B:193 , TYR B:220 , HOH B:277 , HOH B:285 , HOH B:287
BINDING SITE FOR RESIDUE GLU B 264
11
BC2
SOFTWARE
PRO B:105 , MET B:107 , SER B:108 , SER B:217 , LYS B:218 , GLY B:219 , LEU B:239 , SER B:242 , ASP B:248 , HOH B:306 , HOH B:336 , HOH B:429
BINDING SITE FOR RESIDUE CYZ B 265
12
BC3
SOFTWARE
GLU A:166 , GLU B:42 , HIS B:46 , LEU B:241 , HOH B:971
BINDING SITE FOR RESIDUE ZN B 266
13
BC4
SOFTWARE
HIS B:23 , GLU B:30 , HOH B:859 , HIS C:23
BINDING SITE FOR RESIDUE ZN B 267
14
BC5
SOFTWARE
ASP B:156 , HOH B:390
BINDING SITE FOR RESIDUE ZN B 268
15
BC6
SOFTWARE
ASP B:126 , HOH B:952
BINDING SITE FOR RESIDUE ZN B 269
16
BC7
SOFTWARE
GLU B:201
BINDING SITE FOR RESIDUE ZN B 270
17
BC8
SOFTWARE
ILE B:70 , HOH B:1006
BINDING SITE FOR RESIDUE GOL B 271
18
BC9
SOFTWARE
HOH A:792 , LEU B:12 , MET B:19 , HOH B:449
BINDING SITE FOR RESIDUE GOL B 272
19
CC1
SOFTWARE
VAL B:7 , LYS B:52 , LYS B:82 , HOH B:945
BINDING SITE FOR RESIDUE GOL B 273
20
CC2
SOFTWARE
GLU A:42 , HIS A:46 , ZN A:266 , ARG B:163 , ALA B:165 , GLU B:166 , SER B:168 , PHE B:170
BINDING SITE FOR RESIDUE CAC B 274
21
CC3
SOFTWARE
TYR C:61 , PRO C:89 , LEU C:90 , THR C:91 , ARG C:96 , LEU C:138 , GLY C:141 , SER C:142 , THR C:143 , GLU C:193 , HOH C:280 , HOH C:281 , HOH C:284
BINDING SITE FOR RESIDUE GLU C 264
22
CC4
SOFTWARE
SER A:217 , LYS A:218 , GLY A:219 , GOL A:270 , HOH A:356 , LYS C:104 , PRO C:105 , MET C:107 , SER C:108 , LEU C:239 , SER C:242 , LEU C:247 , ASP C:248 , HOH C:273 , HOH C:323 , HOH C:346 , HOH C:473
BINDING SITE FOR RESIDUE CYZ C 265
23
CC5
SOFTWARE
GLU C:42 , LYS C:45 , HIS C:46 , HOH C:339 , HOH C:342
BINDING SITE FOR RESIDUE ZN C 266
24
CC6
SOFTWARE
ASP C:156 , HOH C:632
BINDING SITE FOR RESIDUE ZN C 267
25
CC7
SOFTWARE
LYS C:82 , HOH C:504 , HOH C:600
BINDING SITE FOR RESIDUE GOL C 268
26
CC8
SOFTWARE
LYS C:4 , GLY C:81 , ASP C:84 , LYS C:204 , PRO C:205 , CYS C:206 , HOH C:374
BINDING SITE FOR RESIDUE GOL C 269
27
CC9
SOFTWARE
LYS C:117 , GLY C:118 , THR C:119 , PRO C:120 , LYS C:185 , GLY C:186 , HOH C:504 , HOH C:767 , HOH C:837
BINDING SITE FOR RESIDUE GOL C 270
28
DC1
SOFTWARE
LEU A:236 , HOH A:1025 , GLU C:97 , GLU C:98 , LYS C:226 , HOH C:964
BINDING SITE FOR RESIDUE GOL C 271
29
DC2
SOFTWARE
GLU C:201 , LYS C:210
BINDING SITE FOR RESIDUE ACT C 272
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3h6ta_ (A:)
1b: SCOP_d3h6tb_ (B:)
1c: SCOP_d3h6tc_ (C:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d3h6ta_
A:
1b
d3h6tb_
B:
1c
d3h6tc_
C:
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3h6tA01 (A:4-109,A:219-258)
1b: CATH_3h6tB01 (B:4-109,B:219-258)
1c: CATH_3h6tC01 (C:4-109,C:219-258)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Rat (Rattus norvegicus)
(37)
1a
3h6tA01
A:4-109,A:219-258
1b
3h6tB01
B:4-109,B:219-258
1c
3h6tC01
C:4-109,C:219-258
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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