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3H46
Asym. Unit
Info
Asym.Unit (165 KB)
Biol.Unit 1 (161 KB)
Biol.Unit 2 (318 KB)
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(1)
Title
:
GLYCEROL KINASE H232E WITH GLYCEROL
Authors
:
J. I. Yeh, R. D. Kettering
Date
:
17 Apr 09 (Deposition) - 02 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : O,X
Biol. Unit 1: O,X (1x)
Biol. Unit 2: O,X (2x)
Keywords
:
Glycerol, Kinase, Atp-Binding, Glycerol Metabolism, Nucleotide- Binding, Phosphoprotein, Transferase
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. I. Yeh, R. Kettering, R. Saxl, A. Bourand, E. Darbon, N. Joly, P. Briozzo, J. Deutscher
Structural Characterizations Of Glycerol Kinase: Unraveling Phosphorylation-Induced Long-Range Activation
Biochemistry V. 48 346 2009
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
2
Ligand/Ion
GLYCEROL
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR X:14 , THR X:15 , GLY X:267 , THR X:268 , GOL X:1001
BINDING SITE FOR RESIDUE SO4 X 507
2
AC2
SOFTWARE
ARG X:84 , GLU X:85 , TRP X:104 , TYR X:136 , ASP X:246 , GLN X:247 , PHE X:271 , SO4 X:507 , HOH X:569
BINDING SITE FOR RESIDUE GOL X 1001
3
AC3
SOFTWARE
EDO O:3123 , SER X:32 , SER X:59
BINDING SITE FOR RESIDUE EDO X 3122
4
AC4
SOFTWARE
THR O:14 , THR O:15 , GLY O:267 , THR O:268 , HOH O:564
BINDING SITE FOR RESIDUE SO4 O 507
5
AC5
SOFTWARE
ARG O:84 , GLU O:85 , TRP O:104 , TYR O:136 , ASP O:246 , GLN O:247 , PHE O:271 , HOH O:564
BINDING SITE FOR RESIDUE GOL O 1000
6
AC6
SOFTWARE
SER O:32 , SER O:59 , EDO X:3122
BINDING SITE FOR RESIDUE EDO O 3123
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: FGGY_KINASES_1 (O:136-148,X:136-148)
2: FGGY_KINASES_2 (O:363-383,X:363-383)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FGGY_KINASES_1
PS00933
FGGY family of carbohydrate kinases signature 1.
GLPK_ENTCA
136-148
2
O:136-148
X:136-148
2
FGGY_KINASES_2
PS00445
FGGY family of carbohydrate kinases signature 2.
GLPK_ENTCA
363-383
2
O:363-383
X:363-383
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Exons
(0, 0)
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3h46o1 (O:3-254)
1b: SCOP_d3h46o2 (O:255-502)
1c: SCOP_d3h46x1 (X:3-254)
1d: SCOP_d3h46x2 (X:255-502)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Glycerol kinase
(21)
Protein domain
:
Glycerol kinase
(21)
Enterococcus casseliflavus [TaxId: 37734]
(8)
1a
d3h46o1
O:3-254
1b
d3h46o2
O:255-502
1c
d3h46x1
X:3-254
1d
d3h46x2
X:255-502
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (165 KB)
Header - Asym.Unit
Biol.Unit 1 (161 KB)
Header - Biol.Unit 1
Biol.Unit 2 (318 KB)
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