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3H3N
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (164 KB)
Biol.Unit 2 (325 KB)
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(1)
Title
:
GLYCEROL KINASE H232R WITH GLYCEROL
Authors
:
J. I. Yeh, R. D. Kettering
Date
:
16 Apr 09 (Deposition) - 02 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : O,X
Biol. Unit 1: O,X (1x)
Biol. Unit 2: O,X (2x)
Keywords
:
Glycerol, Kinase, Atp-Binding, Glycerol Metabolism, Nucleotide- Binding, Phosphoprotein, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. I. Yeh, R. Kettering, R. Saxl, A. Bourand, E. Darbon, N. Joly, P. Briozzo, J. Deutscher
Structural Characterizations Of Glycerol Kinase: Unraveling Phosphorylation-Induced Long-Range Activation
Biochemistry V. 48 346 2009
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
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Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
2
Ligand/Ion
GLYCEROL
3
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG X:84 , GLU X:85 , TRP X:104 , TYR X:136 , ASP X:246 , GLN X:247 , PHE X:271 , PO4 X:507
BINDING SITE FOR RESIDUE GOL X 1000
02
AC2
SOFTWARE
SER O:59 , ALA O:62 , EDO O:3124 , SER X:59 , HOH X:526 , HOH X:611 , EDO X:3123
BINDING SITE FOR RESIDUE EDO X 3122
03
AC3
SOFTWARE
HOH O:593 , SER X:32 , GLN X:33 , SER X:59 , HOH X:609 , EDO X:3122
BINDING SITE FOR RESIDUE EDO X 3123
04
AC4
SOFTWARE
TRP X:54 , GLN X:58 , ARG X:232 , TYR X:234 , HOH X:593
BINDING SITE FOR RESIDUE EDO X 3125
05
AC5
SOFTWARE
THR X:14 , GLY X:267 , THR X:268 , HOH X:519 , HOH X:544 , HOH X:555 , GOL X:1000
BINDING SITE FOR RESIDUE PO4 X 507
06
AC6
SOFTWARE
ARG O:84 , GLU O:85 , TRP O:104 , TYR O:136 , ASP O:246 , GLN O:247 , PHE O:271 , PO4 O:507 , HOH O:629
BINDING SITE FOR RESIDUE GOL O 1001
07
AC7
SOFTWARE
SER O:32 , GLN O:33 , SER O:59 , HOH O:593 , HOH X:609 , EDO X:3122
BINDING SITE FOR RESIDUE EDO O 3124
08
AC8
SOFTWARE
ALA O:310 , GLY O:311 , LEU O:382 , ALA O:413 , HOH O:642
BINDING SITE FOR RESIDUE EDO O 3126
09
AC9
SOFTWARE
GLN O:383 , PHE O:422
BINDING SITE FOR RESIDUE EDO O 3127
10
BC1
SOFTWARE
GLY O:13 , THR O:14 , THR O:268 , HOH O:533 , HOH O:629 , GOL O:1001
BINDING SITE FOR RESIDUE PO4 O 507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: FGGY_KINASES_1 (O:136-148,X:136-148)
2: FGGY_KINASES_2 (O:363-383,X:363-383)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FGGY_KINASES_1
PS00933
FGGY family of carbohydrate kinases signature 1.
GLPK_ENTCA
136-148
2
O:136-148
X:136-148
2
FGGY_KINASES_2
PS00445
FGGY family of carbohydrate kinases signature 2.
GLPK_ENTCA
363-383
2
O:363-383
X:363-383
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3h3no1 (O:2-254)
1b: SCOP_d3h3no2 (O:255-502)
1c: SCOP_d3h3nx1 (X:2-254)
1d: SCOP_d3h3nx2 (X:255-502)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Glycerol kinase
(21)
Protein domain
:
Glycerol kinase
(21)
Enterococcus casseliflavus [TaxId: 37734]
(8)
1a
d3h3no1
O:2-254
1b
d3h3no2
O:255-502
1c
d3h3nx1
X:2-254
1d
d3h3nx2
X:255-502
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (169 KB)
Header - Asym.Unit
Biol.Unit 1 (164 KB)
Header - Biol.Unit 1
Biol.Unit 2 (325 KB)
Header - Biol.Unit 2
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