PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3H1K
Asym. Unit
Info
Asym.Unit (677 KB)
Biol.Unit 1 (662 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CHICKEN CYTOCHROME BC1 COMPLEX WITH ZN++ AND AN IODINATED DERIVATIVE OF KRESOXIM-METHYL BOUND
Authors
:
E. A. Berry, Z. Zhang, H. D. Bellamy, L. S. Huang
Date
:
12 Apr 09 (Deposition) - 28 Apr 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.48
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,N,O,P,Q,R,S,T,U,V,W
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,N,O,P,Q,R,S,T,U,V,W (1x)
Keywords
:
Cytochrome Bc1, Membrane Protein, Heme Protein, Rieske Iron Sulfur Protein, Cytochrome B, Cytochrome C1, Complex Iii, Ubiquinone, Oxidoreductase, Redox Enzyme, Zinc, Kresoxim-Methyl, Respiratory Chain, Electron Transport, Heme, Inner Membrane Iron, Membrane, Metal-Binding, Mitochondrion, Transmembrane, Iron, Mitochondrion Inner Membrane, Transport, Disulfide Bond, Iron-Sulfur, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. A. Berry, Z. Zhang, H. D. Bellamy, L. Huang
Crystallographic Location Of Two Zn(2+)-Binding Sites In Th Avian Cytochrome Bc(1) Complex
Biochim. Biophys. Acta V. 1459 440 2000
[
close entry info
]
Hetero Components
(12, 64)
Info
All Hetero Components
01a: B-OCTYLGLUCOSIDE (BOGa)
01b: B-OCTYLGLUCOSIDE (BOGb)
01c: B-OCTYLGLUCOSIDE (BOGc)
01d: B-OCTYLGLUCOSIDE (BOGd)
01e: B-OCTYLGLUCOSIDE (BOGe)
02a: CARDIOLIPIN (CDLa)
02b: CARDIOLIPIN (CDLb)
02c: CARDIOLIPIN (CDLc)
02d: CARDIOLIPIN (CDLd)
03a: FE2/S2 (INORGANIC) CLUSTER (FESa)
03b: FE2/S2 (INORGANIC) CLUSTER (FESb)
04a: GLYCEROL (GOLa)
04b: GLYCEROL (GOLb)
05a: HEME C (HECa)
05b: HEME C (HECb)
06a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
06b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
06c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
06d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
07a: METHYL (2E)-{2-[(4-IODO-2,5-DIMETH... (IKRa)
07b: METHYL (2E)-{2-[(4-IODO-2,5-DIMETH... (IKRb)
08a: PHOSPHATIDYLETHANOLAMINE (PEEa)
08b: PHOSPHATIDYLETHANOLAMINE (PEEb)
08c: PHOSPHATIDYLETHANOLAMINE (PEEc)
08d: PHOSPHATIDYLETHANOLAMINE (PEEd)
08e: PHOSPHATIDYLETHANOLAMINE (PEEe)
08f: PHOSPHATIDYLETHANOLAMINE (PEEf)
09a: (UNKa)
09aa: (UNKaa)
09ab: (UNKab)
09b: (UNKb)
09c: (UNKc)
09d: (UNKd)
09e: (UNKe)
09f: (UNKf)
09g: (UNKg)
09h: (UNKh)
09i: (UNKi)
09j: (UNKj)
09k: (UNKk)
09l: (UNKl)
09m: (UNKm)
09n: (UNKn)
09o: (UNKo)
09p: (UNKp)
09q: (UNKq)
09r: (UNKr)
09s: (UNKs)
09t: (UNKt)
09u: (UNKu)
09v: (UNKv)
09w: (UNKw)
09x: (UNKx)
09y: (UNKy)
09z: (UNKz)
10a: UNKNOWN LIGAND (UNLa)
10b: UNKNOWN LIGAND (UNLb)
10c: UNKNOWN LIGAND (UNLc)
10d: UNKNOWN LIGAND (UNLd)
10e: UNKNOWN LIGAND (UNLe)
11a: COENZYME Q10, (2Z,6E,10Z,14E,18E,2... (UQa)
11b: COENZYME Q10, (2Z,6E,10Z,14E,18E,2... (UQb)
12a: ZINC ION (ZNa)
12b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
5
Ligand/Ion
B-OCTYLGLUCOSIDE
2
CDL
4
Ligand/Ion
CARDIOLIPIN
3
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
4
GOL
2
Ligand/Ion
GLYCEROL
5
HEC
2
Ligand/Ion
HEME C
6
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
7
IKR
2
Ligand/Ion
METHYL (2E)-{2-[(4-IODO-2,5-DIMETHYLPHENOXY)METHYL]PHENYL}(METHOXYIMINO)ETHANOATE
8
PEE
6
Ligand/Ion
PHOSPHATIDYLETHANOLAMINE
9
UNK
28
Mod. Amino Acid
10
UNL
5
Ligand/Ion
UNKNOWN LIGAND
11
UQ
2
Ligand/Ion
COENZYME Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-ISOMER
12
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:442 , HIS C:222 , PEE E:2005
BINDING SITE FOR RESIDUE PEE A 2008
02
AC2
SOFTWARE
LEU A:431 , LEU A:432
BINDING SITE FOR RESIDUE UNL A 3284
03
AC3
SOFTWARE
HIS A:271 , ASN A:274
BINDING SITE FOR RESIDUE UNL A 3231
04
AC4
SOFTWARE
GLN C:45 , ILE C:46 , GLY C:49 , LEU C:50 , LEU C:52 , ALA C:53 , VAL C:67 , ARG C:81 , HIS C:84 , ALA C:85 , LEU C:124 , THR C:127 , GLY C:131 , LEU C:134 , PRO C:135 , HIS C:183 , PHE C:184 , PRO C:187
BINDING SITE FOR RESIDUE HEM C 501
05
AC5
SOFTWARE
TRP C:32 , GLY C:35 , LEU C:38 , ALA C:39 , HIS C:98 , ARG C:101 , SER C:107 , THR C:113 , TRP C:114 , GLY C:117 , VAL C:118 , LEU C:120 , LEU C:121 , THR C:194 , HIS C:197 , LEU C:198 , LEU C:201 , SER C:206 , ASN C:207 , HOH C:381 , HOH C:384 , UQ C:2002
BINDING SITE FOR RESIDUE HEM C 502
06
AC6
SOFTWARE
MET C:125 , PHE C:129 , TYR C:132 , VAL C:133 , GLY C:143 , ALA C:144 , ILE C:147 , ILE C:269 , LYS C:270 , PRO C:271 , GLU C:272 , TYR C:274 , PHE C:275 , TYR C:279
BINDING SITE FOR RESIDUE IKR C 2001
07
AC7
SOFTWARE
SER C:18 , LEU C:19 , LEU C:22 , ILE C:28 , SER C:36 , ALA C:39 , LEU C:198 , LEU C:201 , HIS C:202 , SER C:206 , PHE C:221 , ASP C:229 , HOH C:385 , HEM C:502
BINDING SITE FOR RESIDUE UQ C 2002
08
AC8
SOFTWARE
SER C:29 , ALA C:30 , TRP C:31 , TYR C:105 , PEE C:2007 , CDL D:2003 , ARG G:40 , PHE G:41 , GLN G:44
BINDING SITE FOR RESIDUE CDL C 2004
09
AC9
SOFTWARE
TRP C:31 , PHE C:96 , TYR C:104 , TYR C:105 , THR C:317 , TRP C:327 , CDL C:2004 , TYR F:29
BINDING SITE FOR RESIDUE PEE C 2007
10
BC1
SOFTWARE
ASP C:253 , PRO C:254 , GLU C:255 , HIS C:268 , HIS D:121
BINDING SITE FOR RESIDUE ZN C 2012
11
BC2
SOFTWARE
PHE C:64 , VAL C:67 , ARG C:81 , ASN C:256 , PHE C:257 , TYR D:115
BINDING SITE FOR RESIDUE GOL C 2011
12
BC3
SOFTWARE
VAL D:36 , CYS D:37 , ALA D:39 , CYS D:40 , HIS D:41 , ASN D:105 , ALA D:108 , ARG D:120 , TYR D:126 , VAL D:127 , LEU D:131 , ILE D:158 , GLY D:159 , MET D:160
BINDING SITE FOR RESIDUE HEC D 501
13
BC4
SOFTWARE
ALA C:30 , ASN C:33 , GLY C:232 , CDL C:2004 , TYR D:220 , LYS D:223 , HIS F:72 , ARG F:73 , ARG G:40
BINDING SITE FOR RESIDUE CDL D 2003
14
BC5
SOFTWARE
TYR C:76 , GLN D:200 , ARG D:203 , MET D:204 , LYS D:207 , BOG D:2091 , ALA E:50 , ASN E:53 , GLN E:57
BINDING SITE FOR RESIDUE BOG D 2009
15
BC6
SOFTWARE
GLN D:200 , ARG D:203 , BOG D:2009
BINDING SITE FOR RESIDUE BOG D 2091
16
BC7
SOFTWARE
CYS E:139 , HIS E:141 , LEU E:142 , CYS E:144 , CYS E:158 , HIS E:161 , SER E:163
BINDING SITE FOR RESIDUE FES E 501
17
BC8
SOFTWARE
TYR A:442 , PEE A:2008 , PHE C:227 , ILE C:230 , TYR E:37 , THR E:40 , THR E:47 , LYS E:52 , PHE J:20 , GLU J:32
BINDING SITE FOR RESIDUE PEE E 2005
18
BC9
SOFTWARE
HIS N:360
BINDING SITE FOR RESIDUE UNL N 4231
19
CC1
SOFTWARE
GLN P:45 , ILE P:46 , GLY P:49 , LEU P:50 , LEU P:52 , ALA P:53 , VAL P:67 , ARG P:81 , HIS P:84 , ALA P:85 , LEU P:124 , THR P:127 , ALA P:128 , GLY P:131 , LEU P:134 , PRO P:135 , HIS P:183 , PHE P:184 , PRO P:187
BINDING SITE FOR RESIDUE HEM P 501
20
CC2
SOFTWARE
TRP P:32 , GLY P:35 , SER P:36 , LEU P:38 , ALA P:39 , HIS P:98 , ARG P:101 , SER P:107 , THR P:113 , TRP P:114 , GLY P:117 , VAL P:118 , LEU P:120 , LEU P:121 , THR P:194 , HIS P:197 , LEU P:198 , LEU P:201 , SER P:206 , ASN P:207 , HOH P:381 , HOH P:384
BINDING SITE FOR RESIDUE HEM P 502
21
CC3
SOFTWARE
MET P:14 , LEU P:198 , THR P:199 , HIS P:202
BINDING SITE FOR RESIDUE BOG P 2010
22
CC4
SOFTWARE
MET P:125 , PHE P:129 , TYR P:132 , VAL P:133 , GLY P:143 , ALA P:144 , ILE P:147 , ILE P:269 , LYS P:270 , PRO P:271 , GLU P:272 , TYR P:274 , PHE P:275 , TYR P:279
BINDING SITE FOR RESIDUE IKR P 3001
23
CC5
SOFTWARE
LEU P:19 , LEU P:22 , ALA P:24 , ILE P:28 , LEU P:198 , LEU P:201 , HIS P:202 , SER P:206 , PHE P:221 , ASP P:229 , HOH P:382
BINDING SITE FOR RESIDUE UQ P 3002
24
CC6
SOFTWARE
SER P:29 , ALA P:30 , TRP P:31 , TYR P:105 , PEE P:3007 , CDL Q:3003 , ARG T:40 , PHE T:41 , GLN T:44
BINDING SITE FOR RESIDUE CDL P 3004
25
CC7
SOFTWARE
TRP P:31 , PHE P:96 , LEU P:97 , TYR P:104 , TYR P:105 , THR P:317 , TRP P:327 , LEU P:333 , TYR P:359 , CDL P:3004 , TYR S:29 , GLN T:44
BINDING SITE FOR RESIDUE PEE P 3007
26
CC8
SOFTWARE
HIS P:222 , PEE R:3005
BINDING SITE FOR RESIDUE PEE P 3008
27
CC9
SOFTWARE
ASP P:253 , GLU P:255 , HIS P:268 , HIS Q:121
BINDING SITE FOR RESIDUE ZN P 3012
28
DC1
SOFTWARE
PHE P:64 , VAL P:67 , ALA P:68 , ARG P:81 , ASN P:256 , TYR Q:115
BINDING SITE FOR RESIDUE GOL P 3011
29
DC2
SOFTWARE
HIS P:159 , GLU P:163
BINDING SITE FOR RESIDUE UNL P 4236
30
DC3
SOFTWARE
VAL Q:36 , CYS Q:37 , ALA Q:39 , CYS Q:40 , HIS Q:41 , ASN Q:105 , ALA Q:108 , ARG Q:120 , TYR Q:126 , VAL Q:127 , LEU Q:131 , GLY Q:159 , MET Q:160
BINDING SITE FOR RESIDUE HEC Q 501
31
DC4
SOFTWARE
ALA P:30 , ASN P:33 , LYS P:228 , GLY P:232 , LEU P:235 , CDL P:3004 , TYR Q:220 , LYS Q:223 , ARG Q:224 , HIS S:72 , ARG S:73 , ARG T:40
BINDING SITE FOR RESIDUE CDL Q 3003
32
DC5
SOFTWARE
GLN Q:200 , ARG Q:203 , MET Q:204 , LYS Q:207 , ALA R:50 , ASN R:53 , GLN R:57
BINDING SITE FOR RESIDUE BOG Q 3009
33
DC6
SOFTWARE
CYS R:139 , HIS R:141 , LEU R:142 , GLY R:143 , CYS R:158 , HIS R:161 , SER R:163
BINDING SITE FOR RESIDUE FES R 501
34
DC7
SOFTWARE
TYR N:442 , PHE P:227 , ILE P:230 , PEE P:3008 , THR R:40 , THR R:47 , LYS R:52 , PHE W:14 , THR W:17 , GLU W:32
BINDING SITE FOR RESIDUE PEE R 3005
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: CYTB_NTER (C:1-210)
2: RIESKE (E:96-194,R:96-194)
3: CYTB_CTER (C:211-380,P:211-380)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTB_NTER
PS51002
Cytochrome b/b6 N-terminal region profile.
CYB_CHICK
1-210
1
C:1-210
2
RIESKE
PS51296
Rieske [2Fe-2S] iron-sulfur domain profile.
UCRI_CHICK
172-270
2
E:96-194
R:96-194
3
CYTB_CTER
PS51003
Cytochrome b/b6 C-terminal region profile.
CYB_CHICK
211-380
2
C:211-380
P:211-380
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(11, 28)
Info
all CATH domains
01a: CATH_3h1kA02 (A:239-442)
01b: CATH_3h1kN01 (N:14-227)
01c: CATH_3h1kN02 (N:239-442)
01d: CATH_3h1kO01 (O:18-227)
01e: CATH_3h1kB01 (B:14-227)
01f: CATH_3h1kB02 (B:239-439)
01g: CATH_3h1kO02 (O:239-439)
01h: CATH_3h1kA01 (A:14-227)
02a: CATH_3h1kD01 (D:1-196)
02b: CATH_3h1kQ01 (Q:1-196)
03a: CATH_3h1kF00 (F:10-110)
03b: CATH_3h1kS00 (S:10-110)
04a: CATH_3h1kH00 (H:10-78)
04b: CATH_3h1kU00 (U:12-78)
05a: CATH_3h1kP00 (P:2-380)
05b: CATH_3h1kC00 (C:1-380)
06a: CATH_3h1kD02 (D:197-241)
06b: CATH_3h1kQ02 (Q:197-241)
07a: CATH_3h1kG00 (G:2-81)
07b: CATH_3h1kT00 (T:2-80)
08a: CATH_3h1kW00 (W:4-63)
08b: CATH_3h1kJ00 (J:4-64)
09a: CATH_3h1kE01 (E:1-64)
09b: CATH_3h1kR01 (R:1-64)
10a: CATH_3h1kE02 (E:65-196)
10b: CATH_3h1kR02 (R:65-196)
11a: CATH_3h1kI00 (I:28-77)
11b: CATH_3h1kV00 (V:28-77)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Chicken (Gallus gallus)
(15)
01a
3h1kA02
A:239-442
01b
3h1kN01
N:14-227
01c
3h1kN02
N:239-442
01d
3h1kO01
O:18-227
01e
3h1kB01
B:14-227
01f
3h1kB02
B:239-439
01g
3h1kO02
O:239-439
01h
3h1kA01
A:14-227
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Chicken (Gallus gallus)
(15)
02a
3h1kD01
D:1-196
02b
3h1kQ01
Q:1-196
Topology
:
Cytochrome Bc1 Complex; Chain F
(39)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain F
(39)
Chicken (Gallus gallus)
(15)
03a
3h1kF00
F:10-110
03b
3h1kS00
S:10-110
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.20, no name defined]
(39)
Chicken (Gallus gallus)
(15)
04a
3h1kH00
H:10-78
04b
3h1kU00
U:12-78
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome Bc1 Complex; Chain C
(51)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain C
(51)
Chicken (Gallus gallus)
(15)
05a
3h1kP00
P:2-380
05b
3h1kC00
C:1-380
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.100, no name defined]
(56)
Chicken (Gallus gallus)
(15)
06a
3h1kD02
D:197-241
06b
3h1kQ02
Q:197-241
Homologous Superfamily
:
[code=1.20.5.210, no name defined]
(39)
Chicken (Gallus gallus)
(15)
07a
3h1kG00
G:2-81
07b
3h1kT00
T:2-80
Homologous Superfamily
:
[code=1.20.5.260, no name defined]
(39)
Chicken (Gallus gallus)
(15)
08a
3h1kW00
W:4-63
08b
3h1kJ00
J:4-64
Homologous Superfamily
:
[code=1.20.5.270, no name defined]
(39)
Chicken (Gallus gallus)
(15)
09a
3h1kE01
E:1-64
09b
3h1kR01
R:1-64
Class
:
Mainly Beta
(13760)
Architecture
:
3-layer Sandwich
(102)
Topology
:
Rieske Iron-sulfur Protein
(99)
Homologous Superfamily
:
'Rieske'-like iron-sulphur domains
(99)
Chicken (Gallus gallus)
(15)
10a
3h1kE02
E:65-196
10b
3h1kR02
R:65-196
Architecture
:
Ribbon
(789)
Topology
:
Cytochrome Bc1 Complex; Chain I
(29)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain I
(29)
Chicken (Gallus gallus)
(12)
11a
3h1kI00
I:28-77
11b
3h1kV00
V:28-77
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
Chain W
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (677 KB)
Header - Asym.Unit
Biol.Unit 1 (662 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3H1K
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help