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3H03
Asym. Unit
Info
Asym.Unit (181 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (90 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BINDING DOMAIN OF THE AMPA SUBUNIT GLUR2 BOUND TO UBP277
Authors
:
A. H. Ahmed, R. E. Oswald
Date
:
08 Apr 09 (Deposition) - 05 May 09 (Release) - 16 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,D,G
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,G (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Glutamate Receptor, Glur2, Ampa Receptor, Neurotransmitter Receptor, S1S2, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. H. Ahmed, M. D. Thompson, M. K. Fenwick, B. Romero, A. P. Loh, D. E. Jane, H. Sondermann, R. E. Oswald
Mechanisms Of Antagonism Of The Glur2 Ampa Receptor: Structure And Dynamics Of The Complex Of Two Willardiine Antagonists With The Glutamate Binding Domain.
Biochemistry V. 48 3894 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: 3-[3-(2-CARBOXYETHYL)-2,4-DIOXO-3,... (UBPa)
1b: 3-[3-(2-CARBOXYETHYL)-2,4-DIOXO-3,... (UBPb)
1c: 3-[3-(2-CARBOXYETHYL)-2,4-DIOXO-3,... (UBPc)
1d: 3-[3-(2-CARBOXYETHYL)-2,4-DIOXO-3,... (UBPd)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
UBP
4
Ligand/Ion
3-[3-(2-CARBOXYETHYL)-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL]-L-ALANINE
2
ZN
8
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , THR A:174 , TYR A:190 , LEU A:192 , GLU A:193 , MET A:196 , TYR A:220 , HOH A:313 , HOH A:351 , HOH A:561
BINDING SITE FOR RESIDUE UBP A 801
02
AC2
SOFTWARE
GLU A:42 , HIS A:46
BINDING SITE FOR RESIDUE ZN A 1
03
AC3
SOFTWARE
HIS A:23 , HOH B:673
BINDING SITE FOR RESIDUE ZN A 262
04
AC4
SOFTWARE
TYR B:61 , PRO B:89 , LEU B:90 , THR B:91 , ARG B:96 , THR B:174 , TYR B:190 , LEU B:192 , GLU B:193 , MET B:196 , TYR B:220 , HOH B:329 , HOH B:344 , HOH B:680
BINDING SITE FOR RESIDUE UBP B 802
05
AC5
SOFTWARE
GLU B:42 , HIS B:46
BINDING SITE FOR RESIDUE ZN B 3
06
AC6
SOFTWARE
ASP A:139 , HIS B:23 , GLU B:24
BINDING SITE FOR RESIDUE ZN B 262
07
AC7
SOFTWARE
TYR D:61 , PRO D:89 , LEU D:90 , THR D:91 , ARG D:96 , THR D:174 , TYR D:190 , LEU D:192 , GLU D:193 , MET D:196 , TYR D:220 , HOH D:289 , HOH D:303 , HOH D:344
BINDING SITE FOR RESIDUE UBP D 803
08
AC8
SOFTWARE
HIS D:23
BINDING SITE FOR RESIDUE ZN D 2
09
AC9
SOFTWARE
GLU D:42 , HIS D:46
BINDING SITE FOR RESIDUE ZN D 262
10
BC1
SOFTWARE
TYR G:61 , PRO G:89 , LEU G:90 , THR G:91 , ARG G:96 , THR G:174 , TYR G:190 , LEU G:192 , GLU G:193 , MET G:196 , TYR G:220 , HOH G:313 , HOH G:325 , HOH G:776
BINDING SITE FOR RESIDUE UBP G 804
11
BC2
SOFTWARE
GLU G:42 , HIS G:46
BINDING SITE FOR RESIDUE ZN G 262
12
BC3
SOFTWARE
ASP D:139 , HIS G:23 , GLU G:24
BINDING SITE FOR RESIDUE ZN G 263
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3h03a_ (A:)
1b: SCOP_d3h03b_ (B:)
1c: SCOP_d3h03d_ (D:)
1d: SCOP_d3h03g_ (G:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d3h03a_
A:
1b
d3h03b_
B:
1c
d3h03d_
D:
1d
d3h03g_
G:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3h03A01 (A:5-109,A:219-258)
1b: CATH_3h03B01 (B:5-109,B:219-258)
1c: CATH_3h03D01 (D:5-109,D:219-258)
1d: CATH_3h03G01 (G:5-109,G:219-258)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Rattus norvegicus. Organism_taxid: 10116.
(10)
1a
3h03A01
A:5-109,A:219-258
1b
3h03B01
B:5-109,B:219-258
1c
3h03D01
D:5-109,D:219-258
1d
3h03G01
G:5-109,G:219-258
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (181 KB)
Header - Asym.Unit
Biol.Unit 1 (91 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Biol.Unit 3 (90 KB)
Header - Biol.Unit 3
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