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3GZU
Biol. Unit 1
Info
Asym.Unit (1018 KB)
Biol.Unit 1, α-C (58.1 MB)
Biol.Unit 1 (58.1 MB)
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(1)
Title
:
VP7 RECOATED ROTAVIRUS DLP
Authors
:
J. Z. Chen, E. C. Settembre, S. C. Harrison, N. Grigorieff
Date
:
07 Apr 09 (Deposition) - 14 Jul 09 (Release) - 18 Aug 09 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O (60x)
Keywords
:
Rotavirus, Vp7, Vp6, Vp2, 7Rp, Dlp, Capsid Protein, Metal- Binding, Virion, Zinc, Core Protein, Rna-Binding, Icosaderal Virus
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Z. Chen, E. C. Settembre, S. T. Aoki, X. Zhang, A. R. Bellamy, P. R. Dormitzer, S. C. Harrison, N. Grigorieff
Molecular Interactions In Rotavirus Assembly And Uncoating Seen By High-Resolution Cryo-Em.
Proc. Natl. Acad. Sci. Usa V. 106 10644 2009
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS C:153 , HIS D:153 , LYS D:154 , HIS E:153
BINDING SITE FOR RESIDUE ZN C 398
2
AC2
SOFTWARE
LYS G:154
BINDING SITE FOR RESIDUE ZN G 398
3
AC3
SOFTWARE
HIS J:153 , LYS J:154 , GLU J:327 , LYS K:154
BINDING SITE FOR RESIDUE ZN J 398
4
AC4
SOFTWARE
HIS L:153 , HIS M:153 , LYS M:154 , HIS N:153 , LYS N:154
BINDING SITE FOR RESIDUE ZN N 398
5
AC5
SOFTWARE
HIS O:153
BINDING SITE FOR RESIDUE ZN O 398
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
(2, 26)
Info
all CATH domains
1a: CATH_3gzuC01 (C:1-158,C:329-397)
1b: CATH_3gzuD01 (D:1-158,D:329-397)
1c: CATH_3gzuM01 (M:1-158,M:329-397)
1d: CATH_3gzuN01 (N:1-158,N:329-397)
1e: CATH_3gzuO01 (O:1-158,O:329-397)
1f: CATH_3gzuE01 (E:1-158,E:329-397)
1g: CATH_3gzuF01 (F:1-158,F:329-397)
1h: CATH_3gzuG01 (G:1-158,G:329-397)
1i: CATH_3gzuH01 (H:1-158,H:329-397)
1j: CATH_3gzuI01 (I:1-158,I:329-397)
1k: CATH_3gzuJ01 (J:1-158,J:329-397)
1l: CATH_3gzuK01 (K:1-158,K:329-397)
1m: CATH_3gzuL01 (L:1-158,L:329-397)
2a: CATH_3gzuC02 (C:159-328)
2b: CATH_3gzuD02 (D:159-328)
2c: CATH_3gzuM02 (M:159-328)
2d: CATH_3gzuN02 (N:159-328)
2e: CATH_3gzuO02 (O:159-328)
2f: CATH_3gzuE02 (E:159-328)
2g: CATH_3gzuF02 (F:159-328)
2h: CATH_3gzuG02 (G:159-328)
2i: CATH_3gzuH02 (H:159-328)
2j: CATH_3gzuI02 (I:159-328)
2k: CATH_3gzuJ02 (J:159-328)
2l: CATH_3gzuK02 (K:159-328)
2m: CATH_3gzuL02 (L:159-328)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Viral capsid alpha domain
(3)
Homologous Superfamily
:
Viral capsid alpha domain
(3)
Rv-a (Rotavirus a)
(1)
1a
3gzuC01
C:1-158,C:329-397
1b
3gzuD01
D:1-158,D:329-397
1c
3gzuM01
M:1-158,M:329-397
1d
3gzuN01
N:1-158,N:329-397
1e
3gzuO01
O:1-158,O:329-397
1f
3gzuE01
E:1-158,E:329-397
1g
3gzuF01
F:1-158,F:329-397
1h
3gzuG01
G:1-158,G:329-397
1i
3gzuH01
H:1-158,H:329-397
1j
3gzuI01
I:1-158,I:329-397
1k
3gzuJ01
J:1-158,J:329-397
1l
3gzuK01
K:1-158,K:329-397
1m
3gzuL01
L:1-158,L:329-397
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.170, no name defined]
(7)
Rv-a (Rotavirus a)
(1)
2a
3gzuC02
C:159-328
2b
3gzuD02
D:159-328
2c
3gzuM02
M:159-328
2d
3gzuN02
N:159-328
2e
3gzuO02
O:159-328
2f
3gzuE02
E:159-328
2g
3gzuF02
F:159-328
2h
3gzuG02
G:159-328
2i
3gzuH02
H:159-328
2j
3gzuI02
I:159-328
2k
3gzuJ02
J:159-328
2l
3gzuK02
K:159-328
2m
3gzuL02
L:159-328
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Pfam Domains
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Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Asymmetric Unit 1
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Asym.Unit (1018 KB)
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Biol.Unit 1 (58.1 MB)
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