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3GZP
Biol. Unit 2
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Asym.Unit (87 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (39 KB)
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Title
:
HUMAN SOD1 G93A METAL-FREE VARIANT
Authors
:
A. Galaleldeen, A. B. Taylor, L. J. Whitson, P. J. Hart
Date
:
07 Apr 09 (Deposition) - 13 Oct 09 (Release) - 22 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Oxidoreductase, Human Cu, Zn Superoxide Dismutase, Antioxidant, Metal-Binding, Copper, Zinc, Amyotrophic Lateral Sclerosis, Disease Mutation, Acetylation, Cytoplasm, Apo, Disulfide Bond, Phosphoprotein, Ubl Conjugation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Galaleldeen, R. W. Strange, L. J. Whitson, S. V. Antonyuk, N. Narayana, A. B. Taylor, J. P. Schuermann, S. P. Holloway, S. S. Hasnain, P. J. Hart
Structural And Biophysical Properties Of Metal-Free Pathogenic Sod1 Mutants A4V And G93A.
Arch. Biochem. Biophys. V. 492 40 2009
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(70, 140)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_013518 (A4S, chain C/D, )
02: VAR_007130 (A4T, chain C/D, )
03: VAR_007131 (A4V, chain C/D, )
04: VAR_008717 (C6F, chain C/D, )
05: VAR_007132 (V7E, chain C/D, )
06: VAR_013519 (L8Q, chain C/D, )
07: VAR_013520 (L8V, chain C/D, )
08: VAR_013521 (G12R, chain C/D, )
09: VAR_013522 (V14G, chain C/D, )
10: VAR_007133 (V14M, chain C/D, )
11: VAR_007134 (G16S, chain C/D, )
12: VAR_045876 (F20C, chain C/D, )
13: VAR_013523 (E21G, chain C/D, )
14: VAR_007135 (E21K, chain C/D, )
15: VAR_045877 (Q22L, chain C/D, )
16: VAR_007136 (G37R, chain C/D, )
17: VAR_013524 (L38R, chain C/D, )
18: VAR_007137 (L38V, chain C/D, )
19: VAR_007139 (G41D, chain C/D, )
20: VAR_007138 (G41S, chain C/D, )
21: VAR_007140 (H43R, chain C/D, )
22: VAR_013525 (F45C, chain C/D, )
23: VAR_007141 (H46R, chain C/D, )
24: VAR_007142 (H48Q, chain C/D, )
25: VAR_045878 (H48R, chain C/D, )
26: VAR_013526 (E49K, chain C/D, )
27: VAR_045879 (T54R, chain C/D, )
28: VAR_013527 (N65S, chain C/D, )
29: VAR_016874 (H80A, chain C/D, )
30: VAR_013530 (L84F, chain C/D, )
31: VAR_007143 (L84V, chain C/D, )
32: VAR_007144 (G85R, chain C/D, )
33: VAR_013531 (N86S, chain C/D, )
34: VAR_045880 (V87A, chain C/D, )
35: VAR_045881 (A89T, chain C/D, )
36: VAR_013532 (A89V, chain C/D, )
37: VAR_007145 (D90A, chain C/D, )
38: VAR_013533 (D90V, chain C/D, )
39: VAR_007146 (A93A, chain C/D, )
40: VAR_007147 (A93C, chain C/D, )
41: VAR_007148 (A93D, chain C/D, )
42: VAR_007149 (A93R, chain C/D, )
43: VAR_008719 (A93V, chain C/D, )
44: VAR_065194 (A95G, chain C/D, )
45: VAR_045882 (V97M, chain C/D, )
46: VAR_007150 (E100G, chain C/D, )
47: VAR_013534 (E100K, chain C/D, )
48: VAR_007151 (D101G, chain C/D, )
49: VAR_007152 (D101N, chain C/D, )
50: VAR_008720 (I104F, chain C/D, )
51: VAR_013535 (S105L, chain C/D, )
52: VAR_007153 (L106V, chain C/D, )
53: VAR_013536 (G108V, chain C/D, )
54: VAR_013537 (I112M, chain C/D, )
55: VAR_007154 (I112T, chain C/D, )
56: VAR_007155 (I113T, chain C/D, )
57: VAR_013538 (G114A, chain C/D, )
58: VAR_007156 (R115G, chain C/D, )
59: VAR_045883 (V118L, chain C/D, )
60: VAR_045884 (D124G, chain C/D, )
61: VAR_008722 (D124V, chain C/D, )
62: VAR_007160 (L144F, chain C/D, )
63: VAR_008724 (L144S, chain C/D, )
64: VAR_008725 (A145T, chain C/D, )
65: VAR_013540 (C146R, chain C/D, )
66: VAR_045885 (G147R, chain C/D, )
67: VAR_007161 (V148G, chain C/D, )
68: VAR_007162 (V148I, chain C/D, )
69: VAR_007163 (I149T, chain C/D, )
70: VAR_007164 (I151T, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_013518
A
5
S
SODC_HUMAN
Disease (ALS1)
---
C/D
A
4
S
02
UniProt
VAR_007130
A
5
T
SODC_HUMAN
Disease (ALS1)
---
C/D
A
4
T
03
UniProt
VAR_007131
A
5
V
SODC_HUMAN
Disease (ALS1)
---
C/D
A
4
V
04
UniProt
VAR_008717
C
7
F
SODC_HUMAN
Disease (ALS1)
---
C/D
C
6
F
05
UniProt
VAR_007132
V
8
E
SODC_HUMAN
Disease (ALS1)
---
C/D
V
7
E
06
UniProt
VAR_013519
L
9
Q
SODC_HUMAN
Disease (ALS1)
---
C/D
L
8
Q
07
UniProt
VAR_013520
L
9
V
SODC_HUMAN
Disease (ALS1)
---
C/D
L
8
V
08
UniProt
VAR_013521
G
13
R
SODC_HUMAN
Disease (ALS1)
---
C/D
G
12
R
09
UniProt
VAR_013522
V
15
G
SODC_HUMAN
Disease (ALS1)
---
C/D
V
14
G
10
UniProt
VAR_007133
V
15
M
SODC_HUMAN
Disease (ALS1)
---
C/D
V
14
M
11
UniProt
VAR_007134
G
17
S
SODC_HUMAN
Disease (ALS1)
---
C/D
G
16
S
12
UniProt
VAR_045876
F
21
C
SODC_HUMAN
Disease (ALS1)
---
C/D
F
20
C
13
UniProt
VAR_013523
E
22
G
SODC_HUMAN
Disease (ALS1)
---
C/D
E
21
G
14
UniProt
VAR_007135
E
22
K
SODC_HUMAN
Disease (ALS1)
---
C/D
E
21
K
15
UniProt
VAR_045877
Q
23
L
SODC_HUMAN
Disease (ALS1)
---
C/D
Q
22
L
16
UniProt
VAR_007136
G
38
R
SODC_HUMAN
Disease (ALS1)
---
C/D
G
37
R
17
UniProt
VAR_013524
L
39
R
SODC_HUMAN
Disease (ALS1)
---
C/D
L
38
R
18
UniProt
VAR_007137
L
39
V
SODC_HUMAN
Disease (ALS1)
---
C/D
L
38
V
19
UniProt
VAR_007139
G
42
D
SODC_HUMAN
Disease (ALS1)
---
C/D
G
41
D
20
UniProt
VAR_007138
G
42
S
SODC_HUMAN
Disease (ALS1)
---
C/D
G
41
S
21
UniProt
VAR_007140
H
44
R
SODC_HUMAN
Disease (ALS1)
---
C/D
H
43
R
22
UniProt
VAR_013525
F
46
C
SODC_HUMAN
Disease (ALS1)
---
C/D
F
45
C
23
UniProt
VAR_007141
H
47
R
SODC_HUMAN
Disease (ALS1)
---
C/D
H
46
R
24
UniProt
VAR_007142
H
49
Q
SODC_HUMAN
Disease (ALS1)
---
C/D
H
48
Q
25
UniProt
VAR_045878
H
49
R
SODC_HUMAN
Disease (ALS1)
---
C/D
H
48
R
26
UniProt
VAR_013526
E
50
K
SODC_HUMAN
Disease (ALS1)
---
C/D
E
49
K
27
UniProt
VAR_045879
T
55
R
SODC_HUMAN
Disease (ALS1)
---
C/D
T
54
R
28
UniProt
VAR_013527
N
66
S
SODC_HUMAN
Disease (ALS1)
---
C/D
N
65
S
33
UniProt
VAR_016874
H
81
A
SODC_HUMAN
Disease (ALS1)
---
C/D
H
80
A
34
UniProt
VAR_013530
L
85
F
SODC_HUMAN
Disease (ALS1)
---
C/D
L
84
F
35
UniProt
VAR_007143
L
85
V
SODC_HUMAN
Disease (ALS1)
---
C/D
L
84
V
36
UniProt
VAR_007144
G
86
R
SODC_HUMAN
Disease (ALS1)
---
C/D
G
85
R
37
UniProt
VAR_013531
N
87
S
SODC_HUMAN
Disease (ALS1)
11556620
C/D
N
86
S
38
UniProt
VAR_045880
V
88
A
SODC_HUMAN
Disease (ALS1)
---
C/D
V
87
A
39
UniProt
VAR_045881
A
90
T
SODC_HUMAN
Disease (ALS1)
---
C/D
A
89
T
40
UniProt
VAR_013532
A
90
V
SODC_HUMAN
Disease (ALS1)
---
C/D
A
89
V
41
UniProt
VAR_007145
D
91
A
SODC_HUMAN
Disease (ALS1)
80265967
C/D
D
90
A
42
UniProt
VAR_013533
D
91
V
SODC_HUMAN
Disease (ALS1)
---
C/D
D
90
V
43
UniProt
VAR_007146
G
94
A
SODC_HUMAN
Disease (ALS1)
---
C/D
A
93
A
44
UniProt
VAR_007147
G
94
C
SODC_HUMAN
Disease (ALS1)
---
C/D
A
93
C
45
UniProt
VAR_007148
G
94
D
SODC_HUMAN
Disease (ALS1)
---
C/D
A
93
D
46
UniProt
VAR_007149
G
94
R
SODC_HUMAN
Disease (ALS1)
---
C/D
A
93
R
47
UniProt
VAR_008719
G
94
V
SODC_HUMAN
Disease (ALS1)
---
C/D
A
93
V
48
UniProt
VAR_065194
A
96
G
SODC_HUMAN
Disease (ALS1)
---
C/D
A
95
G
49
UniProt
VAR_045882
V
98
M
SODC_HUMAN
Disease (ALS1)
---
C/D
V
97
M
50
UniProt
VAR_007150
E
101
G
SODC_HUMAN
Disease (ALS1)
---
C/D
E
100
G
51
UniProt
VAR_013534
E
101
K
SODC_HUMAN
Disease (ALS1)
---
C/D
E
100
K
52
UniProt
VAR_007151
D
102
G
SODC_HUMAN
Disease (ALS1)
---
C/D
D
101
G
53
UniProt
VAR_007152
D
102
N
SODC_HUMAN
Disease (ALS1)
---
C/D
D
101
N
54
UniProt
VAR_008720
I
105
F
SODC_HUMAN
Disease (ALS1)
---
C/D
I
104
F
55
UniProt
VAR_013535
S
106
L
SODC_HUMAN
Disease (ALS1)
---
C/D
S
105
L
56
UniProt
VAR_007153
L
107
V
SODC_HUMAN
Disease (ALS1)
---
C/D
L
106
V
57
UniProt
VAR_013536
G
109
V
SODC_HUMAN
Disease (ALS1)
---
C/D
G
108
V
58
UniProt
VAR_013537
I
113
M
SODC_HUMAN
Disease (ALS1)
---
C/D
I
112
M
59
UniProt
VAR_007154
I
113
T
SODC_HUMAN
Disease (ALS1)
---
C/D
I
112
T
60
UniProt
VAR_007155
I
114
T
SODC_HUMAN
Disease (ALS1)
---
C/D
I
113
T
61
UniProt
VAR_013538
G
115
A
SODC_HUMAN
Disease (ALS1)
---
C/D
G
114
A
62
UniProt
VAR_007156
R
116
G
SODC_HUMAN
Disease (ALS1)
---
C/D
R
115
G
63
UniProt
VAR_045883
V
119
L
SODC_HUMAN
Disease (ALS1)
---
C/D
V
118
L
64
UniProt
VAR_045884
D
125
G
SODC_HUMAN
Disease (ALS1)
---
C/D
D
124
G
65
UniProt
VAR_008722
D
125
V
SODC_HUMAN
Disease (ALS1)
---
C/D
D
124
V
70
UniProt
VAR_007160
L
145
F
SODC_HUMAN
Disease (ALS1)
---
C/D
L
144
F
71
UniProt
VAR_008724
L
145
S
SODC_HUMAN
Disease (ALS1)
---
C/D
L
144
S
72
UniProt
VAR_008725
A
146
T
SODC_HUMAN
Disease (ALS1)
---
C/D
A
145
T
73
UniProt
VAR_013540
C
147
R
SODC_HUMAN
Disease (ALS1)
---
C/D
C
146
R
74
UniProt
VAR_045885
G
148
R
SODC_HUMAN
Disease (ALS1)
---
C/D
G
147
R
75
UniProt
VAR_007161
V
149
G
SODC_HUMAN
Disease (ALS1)
---
C/D
V
148
G
76
UniProt
VAR_007162
V
149
I
SODC_HUMAN
Disease (ALS1)
---
C/D
V
148
I
77
UniProt
VAR_007163
I
150
T
SODC_HUMAN
Disease (ALS1)
---
C/D
I
149
T
78
UniProt
VAR_007164
I
152
T
SODC_HUMAN
Disease (ALS1)
---
C/D
I
151
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: SOD_CU_ZN_1 (C:44-54,D:44-54)
2: SOD_CU_ZN_2 (C:140-149,D:140-149)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOD_CU_ZN_1
PS00087
Copper/Zinc superoxide dismutase signature 1.
SODC_HUMAN
45-55
2
-
-
C:44-54
D:44-54
2
SOD_CU_ZN_2
PS00332
Copper/Zinc superoxide dismutase signature 2.
SODC_HUMAN
139-150
2
-
-
C:140-149
D:140-149
[
close PROSITE info
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3gzpa_ (A:)
1b: SCOP_d3gzpb_ (B:)
1c: SCOP_d3gzpc_ (C:)
1d: SCOP_d3gzpd_ (D:)
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Protein Domains
(
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(
)
Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cu,Zn superoxide dismutase-like
(165)
Family
:
Cu,Zn superoxide dismutase-like
(158)
Protein domain
:
Cu,Zn superoxide dismutase, SOD
(134)
Human (Homo sapiens) [TaxId: 9606]
(69)
1a
d3gzpa_
A:
1b
d3gzpb_
B:
1c
d3gzpc_
C:
1d
d3gzpd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3gzpA00 (A:1-153)
1b: CATH_3gzpB00 (B:1-153)
1c: CATH_3gzpC00 (C:1-153)
1d: CATH_3gzpD00 (D:1-153)
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Organisms
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.200, no name defined]
(125)
Human (Homo sapiens)
(52)
1a
3gzpA00
A:1-153
1b
3gzpB00
B:1-153
1c
3gzpC00
C:1-153
1d
3gzpD00
D:1-153
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Pfam Domains
(0, 0)
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all PFAM domains
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