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3GXU
Asym. Unit
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Asym.Unit (63 KB)
Biol.Unit 1 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EPH RECEPTOR AND EPHRIN COMPLEX
Authors
:
H. N. Qin, J. X. Song
Date
:
03 Apr 09 (Deposition) - 27 Oct 09 (Release) - 10 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Complex Structure, Eph, Ephrin, Atp-Binding, Glycoprotein, Kinase, Membrane, Nucleotide-Binding, Phosphoprotein, Polymorphism, Receptor, Transferase, Transmembrane, Tyrosine-Protein Kinase, Developmental Protein, Differentiation, Disulfide Bond, Host-Virus Interaction, Neurogenesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Qin, R. Noberini, X. Huan, J. Shi, E. B. Pasquale, J. Song
Structural Characterization Of The Epha4-Ephrin-B2 Complex Reveals New Features Enabling Eph-Ephrin Binding Promiscuity
J. Biol. Chem. 2009
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: EPHRIN_RBD_2 (B:31-167)
2: EPH_LBD (A:2-175)
3: EPHRIN_RBD_1 (B:112-139)
4: RECEPTOR_TYR_KIN_V_1 (A:157-175)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPHRIN_RBD_2
PS51551
Ephrin receptor-binding (ephrin RBD) domain profile.
EFNB2_HUMAN
28-164
1
B:31-167
2
EPH_LBD
PS51550
Eph receptor ligand-binding domain profile.
EPHA4_HUMAN
30-209
1
A:2-175
3
EPHRIN_RBD_1
PS01299
Ephrin receptor-binding (ephrin RBD) domain signature.
EFNB2_HUMAN
109-136
1
B:112-139
4
RECEPTOR_TYR_KIN_V_1
PS00790
Receptor tyrosine kinase class V signature 1.
EPHA4_HUMAN
185-205
1
A:157-175
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (B:30-44)
Exon 1.2 (B:44-139 (gaps))
Exon 1.3 (B:139-170)
Exon 1.4 (B:170-172)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5b
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000245323
1a
ENSE00001931658
chr13:
107187462-107187191
272
EFNB2_HUMAN
1-41
41
1
B:30-44
15
1.2
ENST00000245323
2
ENSE00001654984
chr13:
107165160-107164877
284
EFNB2_HUMAN
41-136
96
1
B:44-139 (gaps)
96
1.3
ENST00000245323
3
ENSE00000995278
chr13:
107148188-107148096
93
EFNB2_HUMAN
136-167
32
1
B:139-170
32
1.4
ENST00000245323
4
ENSE00000854052
chr13:
107147342-107147229
114
EFNB2_HUMAN
167-205
39
1
B:170-172
3
1.5b
ENST00000245323
5b
ENSE00001923391
chr13:
107145776-107142093
3684
EFNB2_HUMAN
205-333
129
0
-
-
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3gxub_ (B:)
2a: SCOP_d3gxua_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Ephrin ectodomain
(11)
Protein domain
:
Ephrin-b2 ectodomain
(4)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d3gxub_
B:
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Ephrin receptor ligand binding domain
(15)
Protein domain
:
automated matches
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d3gxua_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3gxuA00 (A:1-175)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
1a
3gxuA00
A:1-175
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Pfam Domains
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Asymmetric Unit 1
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