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3GW8
Asym. Unit
Info
Asym.Unit (89 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHOSPHOGLYCEROMUTASE FROM BURKHOLDERIA PSEUDOMALLEI WITH VANADATE AND GLYCEROL
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
31 Mar 09 (Deposition) - 07 Apr 09 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ssgcid, Niaid, Decode, Uwppg, Sbri, Glycolysis, Isomerase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. R. Davies, B. L. Staker, J. A. Abendroth, T. E. Edwards, R. Hartley, J. Leonard, H. Kim, A. L. Rychel, S. N. Hewitt, P. J. Myler, L. J. Stewart
An Ensemble Of Structures Of Burkholderia Pseudomallei 2, 3-Bisphosphoglycerate-Dependent Phosphoglycerate Mutase.
Acta Crystallogr. , Sect. F V. 67 1044 2011
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: TETRAETHYLENE GLYCOL (PG4a)
2b: TETRAETHYLENE GLYCOL (PG4b)
2c: TETRAETHYLENE GLYCOL (PG4c)
2d: TETRAETHYLENE GLYCOL (PG4d)
3a: VANADATE ION (VO4a)
3b: VANADATE ION (VO4b)
3c: VANADATE ION (VO4c)
3d: VANADATE ION (VO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
PG4
4
Ligand/Ion
TETRAETHYLENE GLYCOL
3
VO4
4
Ligand/Ion
VANADATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:8 , HIS A:9 , ASN A:15 , ARG A:60 , GLU A:87 , HIS A:182 , GLY A:183 , HOH A:313 , GOL A:402
BINDING SITE FOR RESIDUE VO4 A 401
02
AC2
SOFTWARE
ARG A:8 , ASN A:15 , ARG A:19 , PHE A:20 , THR A:21 , GLY A:22 , GLU A:87 , TYR A:90 , HOH A:255 , HOH A:383 , VO4 A:401 , VO4 A:403
BINDING SITE FOR RESIDUE GOL A 402
03
AC3
SOFTWARE
PHE A:20 , TYR A:90 , LYS A:98 , ASN A:184 , HOH A:255 , GOL A:402
BINDING SITE FOR RESIDUE VO4 A 403
04
AC4
SOFTWARE
ILE A:196 , LEU A:204 , HIS A:225 , HOH A:414
BINDING SITE FOR RESIDUE PG4 A 501
05
AC5
SOFTWARE
ALA A:173 , LYS A:175
BINDING SITE FOR RESIDUE PG4 A 502
06
AC6
SOFTWARE
LYS A:140 , HOH A:317 , ASP B:51 , LYS B:175
BINDING SITE FOR RESIDUE PG4 A 250
07
AC7
SOFTWARE
ARG B:8 , HIS B:9 , ASN B:15 , ARG B:60 , GLU B:87 , HIS B:182 , GLY B:183 , HOH B:277 , GOL B:402
BINDING SITE FOR RESIDUE VO4 B 401
08
AC8
SOFTWARE
ARG B:8 , ASN B:15 , ARG B:19 , PHE B:20 , THR B:21 , GLY B:22 , GLU B:87 , TYR B:90 , HOH B:342 , VO4 B:401 , VO4 B:403
BINDING SITE FOR RESIDUE GOL B 402
09
AC9
SOFTWARE
TYR B:90 , LYS B:98 , ARG B:114 , ARG B:115 , ASN B:184 , GOL B:402
BINDING SITE FOR RESIDUE VO4 B 403
10
BC1
SOFTWARE
ASP B:194 , ILE B:196 , LEU B:204 , TYR B:214 , HIS B:225 , TYR B:227 , HOH B:282
BINDING SITE FOR RESIDUE PG4 B 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PG_MUTASE (A:6-15,B:6-15,A:6-15,B:6-15)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PG_MUTASE
PS00175
Phosphoglycerate mutase family phosphohistidine signature.
GPMA_BURP1
6-15
2
A:6-15
B:6-15
GPMA_BURPS
6-15
2
A:6-15
B:6-15
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3gw8a_ (A:)
1b: SCOP_d3gw8b_ (B:)
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)
Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglycerate mutase-like
(103)
Superfamily
:
Phosphoglycerate mutase-like
(103)
Family
:
Cofactor-dependent phosphoglycerate mutase
(57)
Protein domain
:
automated matches
(41)
Burkholderia pseudomallei [TaxId: 28450]
(3)
1a
d3gw8a_
A:
1b
d3gw8b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3gw8A00 (A:1-230)
1b: CATH_3gw8B00 (B:1-230)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Phosphoglycerate mutase-like
(91)
Pseudomonas pseudomallei (Burkholderia pseudomallei)
(3)
1a
3gw8A00
A:1-230
1b
3gw8B00
B:1-230
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (89 KB)
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