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Asym. Unit
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Asym.Unit (69 KB)
Biol.Unit 1 (127 KB)
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(1)
Title
:
HUMAN UROD MUTANT K297N
Authors
:
C. P. Hill, J. D. Phillips, F. G. Whitby, C. Warby, J. P. Kushner
Date
:
31 Mar 09 (Deposition) - 07 Jul 09 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Uroporphyrinogen, Decarboxylase, Lyase, Heme Biosynthesis, Porphyria, Disease Mutation, Phosphoprotein, Porphyrin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Warby, J. D. Phillips, H. A. Bergonia, F. G. Whitby, C. P. Hill, J. P. Kushner
Structural And Kinetic Characterization Of Mutant Human Uroporphyrinogen Decarboxylases.
Cell Mol Biol V. 55 40 2009 (Noisy-Le-Grand)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(41, 41)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_060683 (K15E, chain A, )
02: VAR_022567 (G25E, chain A, )
03: VAR_022568 (F46L, chain A, )
04: VAR_009103 (P62L, chain A, )
05: VAR_067457 (P77L, chain A, )
06: VAR_007910 (A80G, chain A, )
07: VAR_022569 (A80S, chain A, )
08: VAR_060684 (P106L, chain A, )
09: VAR_060685 (R113T, chain A, )
10: VAR_009104 (V134Q, chain A, )
11: VAR_010985 (R142Q, chain A, )
12: VAR_022570 (R144P, chain A, )
13: VAR_022571 (G156D, chain A, )
14: VAR_010986 (L161Q, chain A, )
15: VAR_007911 (M165R, chain A, )
16: VAR_007714 (E167K, chain A, )
17: VAR_065558 (G168R, chain A, )
18: VAR_065559 (G170D, chain A, )
19: VAR_022572 (R193P, chain A, )
20: VAR_007912 (L195F, chain A, )
21: VAR_022573 (L216Q, chain A, )
22: VAR_022574 (E218K, chain A, )
23: VAR_010987 (S219F, chain A, )
24: VAR_009105 (H220P, chain A, )
25: VAR_009106 (F229L, chain A, )
26: VAR_022575 (F232L, chain A, )
27: VAR_010988 (P235S, chain A, )
28: VAR_007913 (L253Q, chain A, )
29: VAR_022576 (I260T, chain A, )
30: VAR_007715 (G281E, chain A, )
31: VAR_007716 (G281V, chain A, )
32: VAR_022577 (L282R, chain A, )
33: VAR_007717 (R292G, chain A, )
34: VAR_022578 (G303S, chain A, )
35: VAR_060686 (G303V, chain A, )
36: VAR_007914 (N304K, chain A, )
37: VAR_009107 (Y311C, chain A, )
38: VAR_007915 (G318R, chain A, )
39: VAR_009108 (M324T, chain A, )
40: VAR_007916 (R332H, chain A, )
41: VAR_007917 (I334T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_060683
K
15
E
DCUP_HUMAN
Polymorphism
11541959
A
K
15
E
02
UniProt
VAR_022567
G
25
E
DCUP_HUMAN
Disease (FPCT)
---
A
G
25
E
03
UniProt
VAR_022568
F
46
L
DCUP_HUMAN
Disease (HEP)
---
A
F
46
L
04
UniProt
VAR_009103
P
62
L
DCUP_HUMAN
Disease (HEP)
---
A
P
62
L
05
UniProt
VAR_067457
P
77
L
DCUP_HUMAN
Polymorphism
1131147
A
P
77
L
06
UniProt
VAR_007910
A
80
G
DCUP_HUMAN
Disease (HEP)
---
A
A
80
G
07
UniProt
VAR_022569
A
80
S
DCUP_HUMAN
Disease (FPCT)
---
A
A
80
S
08
UniProt
VAR_060684
P
106
L
DCUP_HUMAN
Polymorphism
11541962
A
P
106
L
09
UniProt
VAR_060685
R
113
T
DCUP_HUMAN
Polymorphism
11541963
A
R
113
T
10
UniProt
VAR_009104
V
134
Q
DCUP_HUMAN
Disease (HEP)
---
A
V
134
Q
11
UniProt
VAR_010985
R
142
Q
DCUP_HUMAN
Disease (FPCT)
---
A
R
142
Q
12
UniProt
VAR_022570
R
144
P
DCUP_HUMAN
Disease (FPCT)
---
A
R
144
P
13
UniProt
VAR_022571
G
156
D
DCUP_HUMAN
Disease (FPCT)
---
A
G
156
D
14
UniProt
VAR_010986
L
161
Q
DCUP_HUMAN
Disease (FPCT)
---
A
L
161
Q
15
UniProt
VAR_007911
M
165
R
DCUP_HUMAN
Disease (FPCT)
---
A
M
165
R
16
UniProt
VAR_007714
E
167
K
DCUP_HUMAN
Disease (HEP)
---
A
E
167
K
17
UniProt
VAR_065558
G
168
R
DCUP_HUMAN
Disease (HEP)
---
A
G
168
R
18
UniProt
VAR_065559
G
170
D
DCUP_HUMAN
Disease (HEP)
---
A
G
170
D
19
UniProt
VAR_022572
R
193
P
DCUP_HUMAN
Disease (FPCT)
---
A
R
193
P
20
UniProt
VAR_007912
L
195
F
DCUP_HUMAN
Disease (FPCT)
---
A
L
195
F
21
UniProt
VAR_022573
L
216
Q
DCUP_HUMAN
Disease (FPCT)
---
A
L
216
Q
22
UniProt
VAR_022574
E
218
K
DCUP_HUMAN
Disease (FPCT)
---
A
E
218
K
23
UniProt
VAR_010987
S
219
F
DCUP_HUMAN
Disease (FPCT)
---
A
S
219
F
24
UniProt
VAR_009105
H
220
P
DCUP_HUMAN
Disease (HEP)
---
A
H
220
P
25
UniProt
VAR_009106
F
229
L
DCUP_HUMAN
Disease (FPCT)
---
A
F
229
L
26
UniProt
VAR_022575
F
232
L
DCUP_HUMAN
Disease (FPCT)
---
A
F
232
L
27
UniProt
VAR_010988
P
235
S
DCUP_HUMAN
Disease (FPCT)
---
A
P
235
S
28
UniProt
VAR_007913
L
253
Q
DCUP_HUMAN
Disease (FPCT)
36033115
A
L
253
Q
29
UniProt
VAR_022576
I
260
T
DCUP_HUMAN
Disease (FPCT)
---
A
I
260
T
30
UniProt
VAR_007715
G
281
E
DCUP_HUMAN
Disease (HEP)
---
A
G
281
E
31
UniProt
VAR_007716
G
281
V
DCUP_HUMAN
Disease (FPCT)
---
A
G
281
V
32
UniProt
VAR_022577
L
282
R
DCUP_HUMAN
Disease (FPCT)
---
A
L
282
R
33
UniProt
VAR_007717
R
292
G
DCUP_HUMAN
Disease (HEP)
---
A
R
292
G
34
UniProt
VAR_022578
G
303
S
DCUP_HUMAN
Disease (FPCT)
---
A
G
303
S
35
UniProt
VAR_060686
G
303
V
DCUP_HUMAN
Polymorphism
17849533
A
G
303
V
36
UniProt
VAR_007914
N
304
K
DCUP_HUMAN
Disease (FPCT)
---
A
N
304
K
37
UniProt
VAR_009107
Y
311
C
DCUP_HUMAN
Disease (HEP)
---
A
Y
311
C
38
UniProt
VAR_007915
G
318
R
DCUP_HUMAN
Disease (FPCT)
116233118
A
G
318
R
39
UniProt
VAR_009108
M
324
T
DCUP_HUMAN
Disease (FPCT)
---
A
M
324
T
40
UniProt
VAR_007916
R
332
H
DCUP_HUMAN
Disease (FPCT)
---
A
R
332
H
41
UniProt
VAR_007917
I
334
T
DCUP_HUMAN
Disease (FPCT)
---
A
I
334
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UROD_1 (A:32-41)
2: UROD_2 (A:152-168)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UROD_1
PS00906
Uroporphyrinogen decarboxylase signature 1.
DCUP_HUMAN
32-41
1
A:32-41
2
UROD_2
PS00907
Uroporphyrinogen decarboxylase signature 2.
DCUP_HUMAN
152-168
1
A:152-168
[
close PROSITE info
]
Exons
(9, 9)
Info
All Exons
Exon 1.2e (A:10-45)
Exon 1.3a (A:45-71)
Exon 1.3d (A:72-92)
Exon 1.3h (A:93-158)
Exon 1.3l (A:159-212)
Exon 1.3r (A:213-258)
Exon 1.3x (A:259-292)
Exon 1.3y (A:292-314)
Exon 1.3ac (A:315-366)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.2e
02: Boundary 1.2e/1.3a
03: Boundary 1.3a/1.3d
04: Boundary 1.3d/1.3h
05: Boundary 1.3h/1.3l
06: Boundary 1.3l/1.3r
07: Boundary 1.3r/1.3x
08: Boundary 1.3x/1.3y
09: Boundary 1.3y/1.3ac
10: Boundary 1.3ac/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000246337
1a
ENSE00001901830
chr1:
45477819-45477957
139
DCUP_HUMAN
1-7
7
0
-
-
1.2e
ENST00000246337
2e
ENSE00000861511
chr1:
45478579-45478691
113
DCUP_HUMAN
7-45
39
1
A:10-45
36
1.3a
ENST00000246337
3a
ENSE00000861512
chr1:
45478808-45478887
80
DCUP_HUMAN
45-71
27
1
A:45-71
27
1.3d
ENST00000246337
3d
ENSE00000861513
chr1:
45478964-45479026
63
DCUP_HUMAN
72-92
21
1
A:72-92
21
1.3h
ENST00000246337
3h
ENSE00000861514
chr1:
45479266-45479463
198
DCUP_HUMAN
93-158
66
1
A:93-158
66
1.3l
ENST00000246337
3l
ENSE00000861515
chr1:
45479581-45479742
162
DCUP_HUMAN
159-212
54
1
A:159-212
54
1.3r
ENST00000246337
3r
ENSE00002175268
chr1:
45480111-45480248
138
DCUP_HUMAN
213-258
46
1
A:213-258
46
1.3x
ENST00000246337
3x
ENSE00001704499
chr1:
45480408-45480508
101
DCUP_HUMAN
259-292
34
1
A:259-292
34
1.3y
ENST00000246337
3y
ENSE00001751935
chr1:
45480612-45480678
67
DCUP_HUMAN
292-314
23
1
A:292-314
23
1.3ac
ENST00000246337
3ac
ENSE00001046415
chr1:
45481009-45481247
239
DCUP_HUMAN
315-367
53
1
A:315-366
52
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3gw3a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
UROD/MetE-like
(30)
Family
:
Uroporphyrinogen decarboxylase, UROD
(22)
Protein domain
:
Uroporphyrinogen decarboxylase, UROD
(21)
Human (Homo sapiens) [TaxId: 9606]
(19)
1a
d3gw3a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3gw3A00 (A:10-366)
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
[code=3.20.20.210, no name defined]
(35)
Human (Homo sapiens)
(19)
1a
3gw3A00
A:10-366
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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(currently selected atoms:
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Chain A
Asymmetric Unit 1
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Asym.Unit (69 KB)
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