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3GVH
Asym. Unit
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Asym.Unit (208 KB)
Biol.Unit 1 (201 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LACTATE/MALATE DEHYDROGENASE FROM BRUCELLA MELITENSIS
Authors
:
Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Date
:
31 Mar 09 (Deposition) - 14 Apr 09 (Release) - 14 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Lactate/Malate Dehydrogenase, Brucella Melitensis, Nad, Oxidoreductase, Tricarboxylic Acid Cycle, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid
(Keyword Search:
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Reference
:
J. Abendroth, B. Staker
Crystal Structure Of Lactate/Malate Dehydrogenase From Brucella Melitensis
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
1c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
1d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
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No.
Name
Count
Type
Full Name
1
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:12 , MET A:13 , ILE A:14 , ASP A:34 , ILE A:35 , THR A:78 , ALA A:79 , GLY A:80 , VAL A:99 , GLN A:102 , ILE A:119 , ASN A:121 , MET A:144 , LEU A:148 , HIS A:176 , HOH A:330 , HOH A:427 , HOH A:503
BINDING SITE FOR RESIDUE NAD A 400
2
AC2
SOFTWARE
GLY B:12 , MET B:13 , ILE B:14 , PHE B:33 , ASP B:34 , ILE B:35 , THR B:78 , ILE B:119 , ASN B:121 , MET B:144 , LEU B:148 , HIS B:176 , HOH B:351 , HOH B:413
BINDING SITE FOR RESIDUE NAD B 400
3
AC3
SOFTWARE
GLY C:12 , MET C:13 , ILE C:14 , ASP C:34 , ILE C:35 , THR C:78 , GLY C:80 , ILE C:119 , ASN C:121 , LEU C:123 , MET C:144 , HIS C:176 , HOH C:376 , HOH C:404 , HOH C:405
BINDING SITE FOR RESIDUE NAD C 400
4
AC4
SOFTWARE
GLY D:12 , MET D:13 , ILE D:14 , ASP D:34 , THR D:78 , ALA D:79 , VAL D:99 , ILE D:119 , ASN D:121 , MET D:144 , LEU D:148 , HIS D:176 , HOH D:351 , HOH D:378
BINDING SITE FOR RESIDUE NAD D 400
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3gvha2 (A:145-319)
1b: SCOP_d3gvhb2 (B:145-319)
1c: SCOP_d3gvhc2 (C:145-319)
1d: SCOP_d3gvhd2 (D:145-319)
2a: SCOP_d3gvha1 (A:2-144)
2b: SCOP_d3gvhb1 (B:2-144)
2c: SCOP_d3gvhc1 (C:2-144)
2d: SCOP_d3gvhd1 (D:2-144)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
automated matches
(38)
Protein domain
:
automated matches
(38)
Brucella melitensis [TaxId: 359391]
(2)
1a
d3gvha2
A:145-319
1b
d3gvhb2
B:145-319
1c
d3gvhc2
C:145-319
1d
d3gvhd2
D:145-319
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Brucella melitensis [TaxId: 359391]
(3)
2a
d3gvha1
A:2-144
2b
d3gvhb1
B:2-144
2c
d3gvhc1
C:2-144
2d
d3gvhd1
D:2-144
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3gvhA01 (A:2-145)
1b: CATH_3gvhB01 (B:2-145)
1c: CATH_3gvhC01 (C:2-145)
1d: CATH_3gvhD01 (D:2-145)
2a: CATH_3gvhA02 (A:146-319)
2b: CATH_3gvhB02 (B:146-319)
2c: CATH_3gvhC02 (C:146-319)
2d: CATH_3gvhD02 (D:146-319)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Brucella melitensis biovar abortus 2308. Organism_taxid: 359391.
(2)
1a
3gvhA01
A:2-145
1b
3gvhB01
B:2-145
1c
3gvhC01
C:2-145
1d
3gvhD01
D:2-145
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Brucella melitensis biovar abortus 2308. Organism_taxid: 359391.
(2)
2a
3gvhA02
A:146-319
2b
3gvhB02
B:146-319
2c
3gvhC02
C:146-319
2d
3gvhD02
D:146-319
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Pfam Domains
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