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3GVD
Asym. Unit
Info
Asym.Unit (1003 KB)
Biol.Unit 1 (500 KB)
Biol.Unit 2 (505 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SERINE ACETYLTRANSFERASE CYSE FROM YERSINIA PESTIS
Authors
:
Y. Kim, M. Zhou, S. Peterson, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
30 Mar 09 (Deposition) - 12 May 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Left-Handed Beta-Helix, Structural Genomics Of National Institute Of Allergy And Infectious Diseases, Acyltransferase, Transferase, Center For Structural Genomics Of Infectious Diseases, Csgid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, M. Zhou, S. Peterson, W. F. Anderson, A. Joachimiak
Crystal Structure Of Serine Acetyltransferase Cyse From Yersinia Pestis
To Be Published
[
close entry info
]
Hetero Components
(6, 28)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
2a: CYSTEINE (CYSa)
2b: CYSTEINE (CYSb)
2c: CYSTEINE (CYSc)
2d: CYSTEINE (CYSd)
2e: CYSTEINE (CYSe)
2f: CYSTEINE (CYSf)
2g: CYSTEINE (CYSg)
2h: CYSTEINE (CYSh)
2i: CYSTEINE (CYSi)
2j: CYSTEINE (CYSj)
2k: CYSTEINE (CYSk)
2l: CYSTEINE (CYSl)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
5a: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-... (PG5a)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
4
Ligand/Ion
ACETIC ACID
2
CYS
12
Mod. Amino Acid
CYSTEINE
3
GOL
5
Ligand/Ion
GLYCEROL
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG5
1
Ligand/Ion
1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
6
SO4
5
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:179 , LYS A:207 , HOH A:838 , SER B:179 , LYS B:207 , SER C:179 , LYS C:207
BINDING SITE FOR RESIDUE SO4 A 274
02
AC2
SOFTWARE
ASP A:96 , LYS A:97 , LYS B:126 , ILE B:130
BINDING SITE FOR RESIDUE ACY A 275
03
AC3
SOFTWARE
GLY A:184 , ARG A:192 , HIS A:193 , HOH A:322 , HOH A:950 , ASP C:92 , PRO C:93 , ASP C:157 , HIS C:158
BINDING SITE FOR RESIDUE CYS A 501
04
AC4
SOFTWARE
ASP A:92 , PRO A:93 , ALA A:94 , ASP A:157 , HIS A:158 , HOH A:282 , HOH A:283 , GLY B:184 , ARG B:192 , HIS B:193 , HOH B:897
BINDING SITE FOR RESIDUE CYS A 276
05
AC5
SOFTWARE
ASP B:96 , LYS B:97 , HOH B:441 , ALA C:127 , ILE C:130
BINDING SITE FOR RESIDUE GOL B 274
06
AC6
SOFTWARE
ASP B:92 , PRO B:93 , ALA B:94 , ASP B:157 , HIS B:158 , HOH B:486 , GLY C:184 , ARG C:192 , HIS C:193
BINDING SITE FOR RESIDUE CYS B 501
07
AC7
SOFTWARE
ALA C:0 , HIS C:76 , ARG C:83 , ARG C:91 , CYS C:152 , GLY C:153 , ASN C:172 , ASP C:173 , HOH C:520
BINDING SITE FOR RESIDUE PG5 C 274
08
AC8
SOFTWARE
ILE A:130 , ASP C:96 , LYS C:97
BINDING SITE FOR RESIDUE ACY C 275
09
AC9
SOFTWARE
GLY D:184 , ARG D:192 , HIS D:193 , HOH D:279 , ASP F:92 , PRO F:93 , ASP F:157 , HIS F:158 , HOH F:288
BINDING SITE FOR RESIDUE CYS D 501
10
BC1
SOFTWARE
ASP D:92 , PRO D:93 , ALA D:94 , ASP D:157 , HIS D:158 , GLY E:184 , ARG E:192 , HIS E:193 , HOH E:1001
BINDING SITE FOR RESIDUE CYS D 274
11
BC2
SOFTWARE
LEU E:20 , ASP E:96 , LYS E:97 , HOH E:699 , LYS F:126 , ALA F:127
BINDING SITE FOR RESIDUE GOL E 274
12
BC3
SOFTWARE
ASP E:92 , PRO E:93 , ALA E:94 , ASP E:157 , HIS E:158 , HOH E:293 , HOH E:427 , GLY F:184 , ARG F:192 , HIS F:193
BINDING SITE FOR RESIDUE CYS E 501
13
BC4
SOFTWARE
SER D:179 , GLY D:205 , LYS D:207 , SER E:179 , GLY E:205 , LYS E:207 , SER F:179 , GLY F:205 , LYS F:207
BINDING SITE FOR RESIDUE SO4 F 274
14
BC5
SOFTWARE
LYS D:126 , ALA D:127 , LEU F:20 , ASP F:96 , LYS F:97 , HOH F:767 , HOH F:946
BINDING SITE FOR RESIDUE GOL F 275
15
BC6
SOFTWARE
ASP G:92 , PRO G:93 , ASP G:157 , HIS G:158 , HOH G:651 , GLY H:184 , ARG H:192 , HIS H:193 , HOH H:279 , HOH H:556
BINDING SITE FOR RESIDUE CYS G 501
16
BC7
SOFTWARE
SER G:179 , GLY G:205 , LYS G:207 , SER H:179 , GLY H:205 , LYS H:207 , SER I:179 , LYS I:207
BINDING SITE FOR RESIDUE SO4 H 274
17
BC8
SOFTWARE
ASP H:96 , LYS H:97 , ALA I:127 , ILE I:130 , HOH I:413
BINDING SITE FOR RESIDUE GOL H 275
18
BC9
SOFTWARE
ASP H:92 , PRO H:93 , ASP H:157 , HIS H:158 , HOH H:599 , GLY I:184 , ARG I:192 , HIS I:193
BINDING SITE FOR RESIDUE CYS H 501
19
CC1
SOFTWARE
GLY G:184 , ARG G:192 , HIS G:193 , ASP I:92 , PRO I:93 , ALA I:94 , ASP I:157 , HIS I:158 , HOH I:276
BINDING SITE FOR RESIDUE CYS I 501
20
CC2
SOFTWARE
ARG J:89 , ASP J:92 , PRO J:93 , VAL J:95 , ASP J:96 , HOH J:931
BINDING SITE FOR RESIDUE GOL J 274
21
CC3
SOFTWARE
GLN I:123 , ASP J:124 , HOH J:397 , CYS L:23
BINDING SITE FOR RESIDUE ACY J 275
22
CC4
SOFTWARE
ASP J:96 , LYS J:97 , HOH J:286
BINDING SITE FOR RESIDUE ACY J 276
23
CC5
SOFTWARE
ASP J:92 , PRO J:93 , ALA J:94 , ASP J:157 , HIS J:158 , HOH J:888 , GLY K:184 , ARG K:192 , HIS K:193 , HOH K:286
BINDING SITE FOR RESIDUE CYS J 501
24
CC6
SOFTWARE
SER I:29 , PRO K:59 , HOH K:293 , HOH K:844 , HOH K:967
BINDING SITE FOR RESIDUE SO4 K 274
25
CC7
SOFTWARE
SER J:179 , LYS J:207 , SER K:179 , LYS K:207 , SER L:179 , LYS L:207 , HOH L:822
BINDING SITE FOR RESIDUE SO4 L 274
26
CC8
SOFTWARE
TRP J:121 , HOH J:278 , LEU L:20 , ASP L:96 , LYS L:97 , HOH L:286
BINDING SITE FOR RESIDUE PEG L 275
27
CC9
SOFTWARE
GLY J:184 , ARG J:192 , HIS J:193 , ASP L:92 , PRO L:93 , ALA L:94 , ASP L:157 , HIS L:158 , HOH L:933
BINDING SITE FOR RESIDUE CYS L 501
28
DC1
SOFTWARE
ASP K:92 , ALA K:94 , ASP K:157 , HIS K:158 , HOH K:292 , GLY L:184 , ARG L:192 , HIS L:193 , HOH L:289 , HOH L:396
BINDING SITE FOR RESIDUE CYS L 276
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3gvda_ (A:)
1b: SCOP_d3gvdb_ (B:)
1c: SCOP_d3gvdk_ (K:)
1d: SCOP_d3gvdl_ (L:)
1e: SCOP_d3gvdc_ (C:)
1f: SCOP_d3gvdd_ (D:)
1g: SCOP_d3gvde_ (E:)
1h: SCOP_d3gvdf_ (F:)
1i: SCOP_d3gvdg_ (G:)
1j: SCOP_d3gvdh_ (H:)
1k: SCOP_d3gvdi_ (I:)
1l: SCOP_d3gvdj_ (J:)
View:
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(
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Superfamilies
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
Serine acetyltransferase
(7)
Protein domain
:
automated matches
(2)
Yersinia pestis [TaxId: 632]
(1)
1a
d3gvda_
A:
1b
d3gvdb_
B:
1c
d3gvdk_
K:
1d
d3gvdl_
L:
1e
d3gvdc_
C:
1f
d3gvdd_
D:
1g
d3gvde_
E:
1h
d3gvdf_
F:
1i
d3gvdg_
G:
1j
d3gvdh_
H:
1k
d3gvdi_
I:
1l
d3gvdj_
J:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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