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3GUP
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (31 KB)
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(1)
Title
:
T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY--PYRIDINE BINDING
Authors
:
L. Liu, B. W. Matthews
Date
:
30 Mar 09 (Deposition) - 25 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
T4 Lysozyme, Apolar Cavity, Buried Charge, Ligand Binding, Antimicrobial, Bacteriolytic Enzyme, Glycosidase, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
L. Liu, W. A. Baase, M. M. Michael, B. W. Matthews
Use Of Stabilizing Mutations To Engineer A Charged Group Within A Ligand-Binding Hydrophobic Cavity In T4 Lysozyme.
Biochemistry V. 48 8842 2009
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: PYRIDINE (0PYa)
1b: PYRIDINE (0PYb)
1c: PYRIDINE (0PYc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
3b: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEb)
4a: CARBONATE ION (CO3a)
4b: CARBONATE ION (CO3b)
5a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0PY
3
Ligand/Ion
PYRIDINE
2
CL
4
Ligand/Ion
CHLORIDE ION
3
CME
2
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
4
CO3
2
Ligand/Ion
CARBONATE ION
5
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:99 , GLU A:102 , VAL A:111 , LEU A:118 , HOH A:601
BINDING SITE FOR RESIDUE 0PY A 501
02
AC2
SOFTWARE
ASP A:10 , ASP A:144 , ARG A:148 , ARG B:125
BINDING SITE FOR RESIDUE CO3 A 165
03
AC3
SOFTWARE
TYR A:88 , ARG A:96 , TYR B:88 , ARG B:96
BINDING SITE FOR RESIDUE MG A 166
04
AC4
SOFTWARE
ASP A:92 , ALA A:93 , CO3 B:165
BINDING SITE FOR RESIDUE CL A 167
05
AC5
SOFTWARE
CYS A:142 , PRO A:143 , ASP A:144 , ARG A:145
BINDING SITE FOR RESIDUE CL A 168
06
AC6
SOFTWARE
CME A:97 , CME B:97 , ILE B:100
BINDING SITE FOR RESIDUE 0PY A 169
07
AC7
SOFTWARE
LEU B:84 , VAL B:87 , ALA B:99 , GLU B:102 , VAL B:111 , LEU B:118 , HOH B:603
BINDING SITE FOR RESIDUE 0PY B 501
08
AC8
SOFTWARE
CL A:167 , ARG B:80 , HOH B:201
BINDING SITE FOR RESIDUE CO3 B 165
09
AC9
SOFTWARE
ASP B:92 , ALA B:93
BINDING SITE FOR RESIDUE CL B 166
10
BC1
SOFTWARE
CYS B:142 , PRO B:143 , ASP B:144 , ARG B:145
BINDING SITE FOR RESIDUE CL B 167
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3gupa_ (A:)
1b: SCOP_d3gupb_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
Phage lysozyme
(550)
Protein domain
:
Phage T4 lysozyme
(546)
Bacteriophage T4 [TaxId: 10665]
(546)
1a
d3gupa_
A:
1b
d3gupb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3gupA00 (A:1-162)
1b: CATH_3gupB00 (B:1-162)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.40, no name defined]
(526)
Enterobacteria phage t4. Organism_taxid: 10665.
(237)
1a
3gupA00
A:1-162
1b
3gupB00
B:1-162
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (66 KB)
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