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Asym. Unit
Info
Asym.Unit (189 KB)
Biol.Unit 1 (181 KB)
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(1)
Title
:
STRUCTURE OF BERBERINE BRIDGE ENZYME IN COMPLEX WITH DEHYDROSCOULERINE
Authors
:
A. Winkler, P. Macheroux, K. Gruber
Date
:
27 Mar 09 (Deposition) - 30 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.63
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Complex With Dehydroscoulerine, Bicovalent Flavinylation, N- Glycosylation, P-Cresol Methyl Hydroxylase Superfamily, Alkaloid Metabolism, Cytoplasmic Vesicle, Fad, Flavoprotein, Glycoprotein, Oxidoreductase
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Reference
:
A. Winkler, M. Puhl, H. Weber, T. M. Kutchan, K. Gruber, P. Macheroux
Berberine Bridge Enzyme Catalyzes The Six Electron Oxidatio Of (S)-Reticuline To Dehydroscoulerine.
Phytochemistry V. 70 1092 2009
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: 2,9-DIHYDROXY-3,10-DIMETHOXY-5,6-D... (DEHa)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
4a: MAGNESIUM ION (MGa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
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No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
DEH
1
Ligand/Ion
2,9-DIHYDROXY-3,10-DIMETHOXY-5,6-DIHYDROISOQUINO[3,2-A]ISOQUINOLINIUM
3
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
DEH A:2 , HOH A:6 , LEU A:99 , ARG A:100 , SER A:101 , GLY A:102 , GLY A:103 , HIS A:104 , SER A:105 , TYR A:106 , SER A:110 , LEU A:122 , SER A:141 , GLY A:164 , TRP A:165 , CYS A:166 , VAL A:169 , GLY A:170 , GLY A:172 , GLY A:173 , HIS A:174 , GLY A:179 , PHE A:180 , GLY A:225 , GLY A:226 , GLY A:229 , ILE A:231 , TYR A:456 , ASN A:458 , HOH A:679 , HOH A:711 , HOH A:717 , HOH A:726 , HOH A:1126 , HOH A:1184
BINDING SITE FOR RESIDUE FAD A 1
2
AC2
SOFTWARE
FAD A:1 , TYR A:106 , TRP A:165 , MET A:182 , SER A:280 , LEU A:282 , ASP A:352 , PHE A:356 , ASN A:390 , GLU A:417
BINDING SITE FOR RESIDUE DEH A 2
3
AC3
SOFTWARE
ASN A:38 , LEU A:76 , ASN A:124 , NAG A:540 , HOH A:569 , HOH A:1046
BINDING SITE FOR RESIDUE NAG A 539
4
AC4
SOFTWARE
BMA A:3 , ARG A:52 , LEU A:56 , NAG A:539 , HOH A:1114
BINDING SITE FOR RESIDUE NAG A 540
5
AC5
SOFTWARE
NAG A:540
BINDING SITE FOR RESIDUE BMA A 3
6
AC6
SOFTWARE
PRO A:314 , ASN A:471 , VAL A:474 , HOH A:644 , HOH A:925 , HOH A:1146
BINDING SITE FOR RESIDUE NAG A 541
7
AC7
SOFTWARE
HOH A:4 , HOH A:5 , ASP A:45 , ASP A:47 , HOH A:543 , HOH A:574
BINDING SITE FOR RESIDUE MG A 542
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: FAD_PCMH (A:67-241)
2: OX2_COVAL_FAD (A:71-104)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_PCMH
PS51387
PCMH-type FAD-binding domain profile.
RETO_ESCCA
67-241
1
A:67-241
2
OX2_COVAL_FAD
PS00862
Oxygen oxidoreductases covalent FAD-binding site.
RETO_ESCCA
71-104
1
A:71-104
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (189 KB)
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